Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   JHY03_RS07055 Genome accession   NZ_CP071044
Coordinates   1606404..1609448 (-) Length   1014 a.a.
NCBI ID   WP_055561394.1    Uniprot ID   A0A6N9VB15
Organism   Streptomyces sp. CA-256286     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1601404..1614448
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHY03_RS07035 (JHY03_14120) - 1603109..1604011 (-) 903 WP_207563945.1 hypothetical protein -
  JHY03_RS07040 (JHY03_14130) - 1604016..1604621 (-) 606 WP_015607855.1 papain-like cysteine protease family protein -
  JHY03_RS07045 - 1604848..1605773 (+) 926 Protein_1404 hypothetical protein -
  JHY03_RS07050 (JHY03_14150) - 1605795..1606223 (-) 429 WP_031125601.1 Rieske (2Fe-2S) protein -
  JHY03_RS07055 (JHY03_14160) uvrA 1606404..1609448 (-) 3045 WP_055561394.1 excinuclease ABC subunit UvrA Machinery gene
  JHY03_RS07060 (JHY03_14170) - 1609800..1610489 (+) 690 WP_031125603.1 maleylpyruvate isomerase family mycothiol-dependent enzyme -
  JHY03_RS07065 (JHY03_14180) - 1610543..1611199 (+) 657 WP_031125604.1 MBL fold metallo-hydrolase -
  JHY03_RS07070 (JHY03_14190) - 1611311..1612324 (-) 1014 WP_031125605.1 TerC family protein -

Sequence

Protein


Download         Length: 1014 a.a.        Molecular weight: 111055.35 Da        Isoelectric Point: 7.9844

>NTDB_id=475916 JHY03_RS07055 WP_055561394.1 1606404..1609448(-) (uvrA) [Streptomyces sp. CA-256286]
MADRLIVRGAREHNLKNVSLDLPRDSLIVFTGLSGSGKSSLAFDTIFAEGQRRYVESLSSYARQFLGQMDKPDVDFIEGL
SPAVSIDQKSTSRNPRSTVGTITEVYDYLRLLFARIGKPHCPECGRPIARQSPQAIVDKVLGLPEGSRFQVLSPLVRERK
GEFVDLFADLQTKGYSRARVDGTTIQLSEPPTLKKQEKHTIEVVIDRLTVKDSAKRRLTDSVETALGLSGGMVVLDFVDL
PEDDPERERMYSEHLYCAYDDLSFEELEPRSFSFNSPFGACPDCTGIGTRMEVDPELIVPDEEKSLDEGAIHPWSHGHTK
EYFGRLIGALSEALGFRTDIPWAGLPQRAKKALLYGHKIQTEVRYRNRYGRERAYTTPAFEGAVQFVKRRHTEAESDSSR
ERFEGYMREVPCPTCEGTRLKPIVLAVTVMERSIAEVAAMSISECAEFLGRLKLNARDKKIAERVLKEVNERLKFLVDVG
LDYLSLNRAAGTLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNHRLIETLVRLRDMGNTLIVVEHDEDTIKVA
DWVVDIGPGAGEHGGKVVHSGSLKELLANKESITGQYLSGKRSIPTPDIRRPVDPARSLTVHGARENNLHDIDVSFPLGV
LTAVTGVSGSGKSTLVNDILYTHLARELNGAKSVPGRHTRVDGDDLVDKVVHVDQSPIGRTPRSNPATYTGVFDHVRRLF
AETMEAKVRGYLPGRFSFNVKGGRCENCSGDGTIKIEMNFLPDVYVPCEVCHGARYNRETLEVHYKGKSIAEVLDMPIEE
GLEFFEAVPTIARHLRTLNEVGLGYVRLGQSAPTLSGGEAQRVKLASELQKRSTGRTVYVLDEPTTGLHFEDISKLITVL
SGLVDKGNSVIVIEHNLDVIKTADWVIDMGPEGGNGGGLVVAEGTPEQVASVPASHTGKFLQSILDADRISEAAVPSGRG
TARKAAARKTAPAKKAVAAKKATATKTAATKATAAKKATATKATAKKATRARKA

Nucleotide


Download         Length: 3045 bp        

>NTDB_id=475916 JHY03_RS07055 WP_055561394.1 1606404..1609448(-) (uvrA) [Streptomyces sp. CA-256286]
GTGGCCGACCGTCTCATCGTCCGTGGCGCGCGCGAGCACAACCTGAAGAACGTCTCGCTCGATCTCCCCCGTGACTCCCT
CATCGTCTTCACCGGGCTCTCCGGGTCGGGCAAGTCGTCCCTCGCGTTCGACACGATCTTCGCCGAGGGCCAGCGGCGCT
ATGTGGAGTCCCTCTCCTCGTACGCCCGGCAGTTCCTCGGCCAGATGGACAAGCCGGACGTCGATTTCATCGAGGGTCTC
TCCCCCGCCGTCTCCATCGACCAGAAGTCGACCTCGCGCAACCCGCGCTCGACGGTCGGCACCATCACGGAGGTCTACGA
CTACCTCCGGCTGCTCTTCGCCCGGATCGGCAAGCCGCACTGCCCCGAGTGCGGCCGCCCCATCGCCCGACAGTCGCCGC
AGGCCATCGTGGACAAGGTCCTCGGCCTGCCCGAGGGCAGCCGCTTCCAGGTGCTCTCGCCGCTGGTGCGCGAGCGCAAG
GGCGAGTTCGTCGACCTCTTCGCCGATCTCCAGACCAAGGGGTACAGCCGGGCCAGGGTCGACGGCACCACCATCCAGCT
CTCCGAGCCGCCCACGCTCAAGAAGCAGGAGAAGCACACCATCGAGGTGGTCATCGACCGCCTCACCGTCAAGGACAGCG
CCAAGCGCCGGCTCACCGACTCGGTCGAGACCGCGCTGGGCCTCTCCGGCGGCATGGTCGTGCTCGACTTCGTCGACCTC
CCGGAGGACGACCCCGAGCGCGAGCGGATGTATTCGGAGCACCTCTACTGCGCGTACGACGACCTCTCCTTCGAGGAGCT
GGAGCCGCGCTCCTTCTCCTTCAACTCGCCCTTCGGCGCCTGCCCCGACTGCACGGGCATCGGTACGCGCATGGAGGTCG
ACCCGGAGCTGATCGTTCCGGACGAGGAGAAGTCGCTCGACGAGGGGGCGATCCACCCCTGGTCGCACGGCCACACCAAG
GAGTACTTCGGCCGGCTGATCGGCGCGCTCTCCGAAGCGCTCGGCTTCCGCACGGACATCCCCTGGGCCGGACTGCCGCA
GCGGGCCAAGAAGGCCCTGCTGTACGGCCACAAGATCCAGACCGAGGTCCGCTACCGCAACCGTTACGGGCGCGAGCGCG
CCTACACGACCCCCGCCTTCGAAGGCGCCGTCCAGTTCGTCAAGCGGCGCCACACCGAGGCCGAGAGCGACTCCAGCCGG
GAGCGCTTCGAGGGCTACATGCGCGAGGTGCCCTGCCCCACCTGTGAGGGCACCCGGCTCAAGCCGATCGTGCTGGCGGT
GACGGTGATGGAGAGGTCCATCGCCGAGGTCGCCGCGATGTCGATCAGCGAGTGCGCCGAGTTCCTCGGCCGCCTCAAGC
TGAACGCCCGGGACAAGAAGATCGCCGAGCGGGTCCTCAAGGAGGTCAACGAGCGGCTGAAGTTCCTGGTCGACGTCGGC
CTGGACTACCTCTCGCTGAACCGCGCGGCCGGCACGCTCTCCGGCGGCGAGGCCCAGCGCATCCGGCTCGCCACCCAGAT
CGGCTCCGGCCTGGTCGGCGTGCTGTACGTCCTGGACGAGCCGTCCATCGGCCTGCACCAGCGCGACAACCACCGCCTGA
TCGAGACCCTGGTCCGGCTCCGCGACATGGGCAACACGCTCATCGTCGTCGAGCACGACGAGGACACCATCAAGGTCGCC
GACTGGGTCGTCGACATCGGCCCCGGCGCCGGTGAGCACGGCGGCAAGGTCGTCCACTCCGGCTCGCTCAAGGAGCTGCT
GGCCAACAAGGAGTCGATCACCGGCCAGTACCTGTCCGGCAAGCGGTCCATCCCGACGCCGGACATCCGCCGCCCGGTCG
ACCCGGCCCGCAGCCTCACCGTGCACGGTGCACGGGAGAACAACCTCCACGACATCGACGTCTCCTTCCCGCTCGGCGTC
CTCACCGCCGTCACTGGCGTCTCCGGGTCCGGGAAGTCGACCCTGGTCAACGACATCCTCTACACCCACCTGGCCCGCGA
GCTGAACGGCGCCAAGTCGGTCCCCGGCCGCCACACCCGGGTCGACGGCGACGACCTCGTCGACAAGGTGGTCCACGTCG
ACCAGTCGCCGATCGGCCGGACGCCCCGGTCCAACCCGGCGACGTACACCGGAGTCTTCGACCACGTCCGCAGGCTCTTC
GCCGAGACGATGGAGGCGAAGGTGCGCGGCTATCTGCCGGGCCGCTTCTCCTTCAACGTCAAGGGCGGCCGCTGCGAGAA
CTGCTCCGGCGACGGCACGATCAAGATCGAGATGAACTTCCTGCCCGATGTGTACGTCCCGTGCGAGGTCTGCCACGGTG
CGCGCTACAACCGGGAGACCCTGGAGGTCCACTACAAGGGCAAGTCCATCGCCGAGGTGCTGGACATGCCGATCGAGGAG
GGCCTGGAGTTCTTCGAGGCCGTCCCGACGATCGCCCGCCACCTCCGTACGCTCAACGAGGTCGGCCTCGGCTATGTGCG
GCTCGGGCAGTCCGCGCCGACCCTCTCCGGCGGTGAGGCGCAGCGCGTCAAGCTGGCGAGCGAGCTCCAGAAGCGCTCCA
CCGGCCGCACGGTCTACGTCCTGGACGAGCCGACCACCGGTCTCCACTTCGAGGACATCAGCAAGCTGATCACGGTCCTC
TCCGGCCTGGTCGACAAGGGCAACTCGGTGATCGTCATCGAGCACAACCTGGATGTCATCAAGACCGCCGACTGGGTCAT
CGACATGGGCCCCGAGGGCGGCAACGGCGGCGGTCTTGTCGTCGCCGAGGGCACCCCGGAGCAGGTCGCCTCGGTCCCCG
CCAGCCACACCGGGAAGTTCCTCCAGTCCATCCTGGACGCGGACCGGATCAGCGAGGCCGCGGTGCCGTCGGGGCGGGGG
ACGGCCCGCAAGGCCGCCGCCCGGAAGACGGCCCCGGCGAAGAAGGCCGTAGCGGCCAAGAAGGCGACGGCCACGAAGAC
GGCCGCCACCAAGGCCACGGCGGCCAAGAAGGCGACGGCCACCAAGGCCACCGCGAAGAAGGCGACGCGCGCCCGCAAGG
CGTGA

Domains

Predicted by InterProScan.

UvrA DNA-binding domain (UvrA_DNA-bind)

(294-404)

UvrA interaction domain (UvrA_inter)

(131-238)

ABC transporter (ABC_tran)

(629-865)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N9VB15

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

56.164

93.59

0.526
  uvrA Streptococcus pneumoniae TIGR4

56.164

93.59

0.526
  uvrA Streptococcus pneumoniae D39

56.164

93.59

0.526