Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   H8S71_RS13590 Genome accession   NZ_CP060417
Coordinates   2642686..2643432 (-) Length   248 a.a.
NCBI ID   WP_021480242.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain ONU 559     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2637686..2648432
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H8S71_RS13565 (H8S71_13560) mreC 2638092..2638964 (-) 873 WP_038829628.1 rod shape-determining protein MreC -
  H8S71_RS13570 (H8S71_13565) mreB 2638995..2640008 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  H8S71_RS13575 (H8S71_13570) radC 2640100..2640795 (-) 696 WP_014480455.1 DNA repair protein RadC -
  H8S71_RS13580 (H8S71_13575) maf 2640832..2641401 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  H8S71_RS13585 (H8S71_13580) spoIIB 2641554..2642552 (-) 999 WP_021480241.1 stage II sporulation protein SpoIIB -
  H8S71_RS13590 (H8S71_13585) comC 2642686..2643432 (-) 747 WP_021480242.1 A24 family peptidase Machinery gene
  H8S71_RS13595 (H8S71_13590) folC 2643573..2644865 (-) 1293 WP_041339279.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  H8S71_RS13600 (H8S71_13595) valS 2644925..2647567 (-) 2643 WP_187002298.1 valine--tRNA ligase -
  H8S71_RS13605 (H8S71_13600) - 2648014..2648205 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26390.98 Da        Isoelectric Point: 9.7803

>NTDB_id=475908 H8S71_RS13590 WP_021480242.1 2642686..2643432(-) (comC) [Bacillus subtilis subsp. subtilis strain ONU 559]
MLSILIIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHKISFMYPTAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=475908 H8S71_RS13590 WP_021480242.1 2642686..2643432(-) (comC) [Bacillus subtilis subsp. subtilis strain ONU 559]
ATGCTATCCATTCTTATTATCTTTGGGCTGATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAAGATTTCTTTTATGTATCCCACAGCAGAGCTTGTGACAGCG
TGTTTATTTGCTGCCGCAGGAATACGCTTTGGCACATCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTCTGTTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTTATTGGCTTTGTGCTTGGTGTGAAGAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTATATGGAGCGGCAGCTGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

98.387

100

0.984