Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   H8S71_RS11875 Genome accession   NZ_CP060417
Coordinates   2341537..2342340 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain ONU 559     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2336537..2347340
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H8S71_RS11850 (H8S71_11845) glpQB 2337675..2338406 (-) 732 WP_049141221.1 glycerophosphodiester phosphodiesterase -
  H8S71_RS11855 (H8S71_11850) yqiI 2338485..2339105 (-) 621 WP_077671425.1 N-acetylmuramoyl-L-alanine amidase -
  H8S71_RS11860 (H8S71_11855) - 2339125..2339421 (-) 297 WP_169037825.1 hypothetical protein -
  H8S71_RS11865 (H8S71_11860) - 2339729..2339881 (+) 153 WP_014480226.1 hypothetical protein -
  H8S71_RS11870 (H8S71_11865) yqiG 2339954..2341072 (+) 1119 WP_032726120.1 NADH-dependent flavin oxidoreductase -
  H8S71_RS11875 (H8S71_11870) spo0A 2341537..2342340 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  H8S71_RS11880 (H8S71_11875) spoIVB 2342616..2343896 (-) 1281 WP_021480004.1 SpoIVB peptidase -
  H8S71_RS11885 (H8S71_11880) recN 2344071..2345801 (-) 1731 WP_038829742.1 DNA repair protein RecN Machinery gene
  H8S71_RS11890 (H8S71_11885) argR 2345838..2346287 (-) 450 WP_015384067.1 arginine repressor ArgR -
  H8S71_RS11895 (H8S71_11890) yqxC 2346385..2347230 (-) 846 WP_076458100.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=475889 H8S71_RS11875 WP_003226427.1 2341537..2342340(-) (spo0A) [Bacillus subtilis subsp. subtilis strain ONU 559]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=475889 H8S71_RS11875 WP_003226427.1 2341537..2342340(-) (spo0A) [Bacillus subtilis subsp. subtilis strain ONU 559]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGACAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTTGGTTATACTGTC
AGCATGACAAAAGCTAAACCGACAAATTCGGAATTCATTGCAATGGTTGCGGATAAGCTGAGATTAGAACATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1