Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   JS609_RS18900 Genome accession   NZ_CP071043
Coordinates   3655834..3656967 (-) Length   377 a.a.
NCBI ID   WP_015251020.1    Uniprot ID   -
Organism   Bacillus subtilis isolate ELA2001105     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3650834..3661967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JS609_RS18860 (JS609_03711) ywnA 3650980..3651381 (-) 402 WP_003227734.1 Rrf2 family transcriptional regulator -
  JS609_RS18865 (JS609_03712) ureC 3651516..3653225 (-) 1710 WP_003243090.1 urease subunit alpha -
  JS609_RS18870 (JS609_03714) ureB 3653222..3653596 (-) 375 WP_015251023.1 urease subunit beta -
  JS609_RS18875 (JS609_03715) ureA 3653593..3653910 (-) 318 WP_003227724.1 urease subunit gamma -
  JS609_RS18880 - 3654091..3654255 (-) 165 WP_015649919.1 hypothetical protein -
  JS609_RS21345 - 3654459..3654641 (-) 183 WP_213414804.1 transporter substrate-binding protein -
  JS609_RS18890 (JS609_03716) csbD 3654938..3655126 (-) 189 WP_003227718.1 stress response protein CsbD -
  JS609_RS18895 (JS609_03717) - 3655199..3655678 (-) 480 WP_003244390.1 hypothetical protein -
  JS609_RS18900 (JS609_03718) rapC 3655834..3656967 (-) 1134 WP_015251020.1 response regulator aspartate phosphatase RapB Regulator
  JS609_RS18905 (JS609_03719) moaA 3657159..3658184 (-) 1026 WP_015483814.1 GTP 3',8-cyclase MoaA -
  JS609_RS18910 (JS609_03720) fdhD 3658200..3658988 (-) 789 WP_003227709.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  JS609_RS18915 (JS609_03721) - 3659222..3659383 (-) 162 WP_014478245.1 hypothetical protein -
  JS609_RS18920 (JS609_03722) ywmD 3659478..3660152 (-) 675 WP_003243553.1 vWA domain-containing protein -
  JS609_RS18925 - 3660205..3660345 (-) 141 WP_014478246.1 hypothetical protein -
  JS609_RS18930 (JS609_03723) ywmC 3660476..3661159 (-) 684 WP_014478248.1 vWA domain-containing protein -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 45038.16 Da        Isoelectric Point: 4.7546

>NTDB_id=475889 JS609_RS18900 WP_015251020.1 3655834..3656967(-) (rapC) [Bacillus subtilis isolate ELA2001105]
MAAYEIPSSQVGVKINKWYKHILAFQVADAVKLKEEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEESQLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALETYKAHDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKGELDQA
AEYFEKALPVFEDYQLEQLPKALFSLTRVLFKKQDSEAAIRYYEKGIAIAQKRNDFFSLAKYKFLQALYVESVNLDMIQE
VFDYMEEKGLYVYIEEFALDAASYFSHREQYKEAVYFYEKAVSMREMIQRNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=475889 JS609_RS18900 WP_015251020.1 3655834..3656967(-) (rapC) [Bacillus subtilis isolate ELA2001105]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAGCTGAAAGAAGAAATTGATCTAGATATCGAACAGATGGAAGAGGATCAGCTGCTTCTCCTGTATT
ATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTACGTAAAGCCTGACCTGCACGAGGAATCTCAGCTTCAATAT
CGTGAATTGATCAAAACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAACAATTACATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCTATG
AACCACGCTGTACAGGCGCTGGAGACGTATAAGGCTCACGATTTTTATAGAGTCAGAAGAATTCAATGCCATTTCGTCAT
ATCAGGAAACTACATAGACTACAGAAATTATGAAAAAGCGCTTGAGCATTTGGATGACGCGTATCGCCTTGCTTTATTGG
AAGGACAGCCCCGTTTGATCGGATCAGCCCTTTATAATATCGGGAATTGCTATGATGACAAGGGGGAGCTGGATCAGGCC
GCCGAATACTTTGAAAAAGCGCTTCCTGTCTTCGAGGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATAGCGAAGCCGCGATACGGTACTATGAAAAAGGGATTGCCATTGCCCAAAAACGAA
ACGACTTCTTCAGTCTGGCAAAATATAAATTTCTGCAGGCATTATATGTGGAATCTGTCAATTTGGATATGATTCAAGAA
GTATTTGATTATATGGAAGAAAAGGGCCTGTATGTATATATTGAAGAATTTGCTTTAGATGCTGCCTCTTATTTCAGTCA
TCGCGAACAATATAAAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAGGAACGATTGTT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)

MalT-like TPR region (TPR_MalT)

(154-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.632

100

0.43
  rapF Bacillus subtilis subsp. subtilis str. 168

42.667

99.469

0.424