Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   H8S71_RS10875 Genome accession   NZ_CP060417
Coordinates   2162000..2162620 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain ONU 559     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2157000..2167620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H8S71_RS10835 (H8S71_10830) ptsA 2158133..2158639 (-) 507 WP_029726788.1 PTS glucose transporter subunit IIA -
  H8S71_RS10840 (H8S71_10835) ypqA 2158775..2159194 (+) 420 WP_042976351.1 Hsp20/alpha crystallin family protein -
  H8S71_RS10845 (H8S71_10840) sppG 2159215..2159592 (-) 378 WP_169037847.1 YppG family protein -
  H8S71_RS10850 (H8S71_10845) yppF 2159780..2159968 (+) 189 WP_003230690.1 YppF family protein -
  H8S71_RS10855 (H8S71_10850) yppE 2160007..2160378 (-) 372 WP_003246080.1 YppE family protein -
  H8S71_RS10860 (H8S71_10855) yppD 2160424..2160669 (-) 246 WP_021481526.1 DUF5446 family protein -
  H8S71_RS10865 (H8S71_10860) sspM 2160868..2160972 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  H8S71_RS10870 (H8S71_10865) yppC 2160997..2161959 (-) 963 WP_021481527.1 DUF2515 domain-containing protein -
  H8S71_RS10875 (H8S71_10870) recU 2162000..2162620 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  H8S71_RS10880 (H8S71_10875) ponA 2162642..2165389 (+) 2748 WP_187001786.1 PBP1A family penicillin-binding protein -
  H8S71_RS10885 (H8S71_10880) ypoC 2165465..2165959 (-) 495 WP_029726783.1 YpoC family protein -
  H8S71_RS10890 (H8S71_10885) nth 2165956..2166615 (-) 660 WP_009967580.1 endonuclease III -
  H8S71_RS10895 (H8S71_10890) dnaD 2166634..2167332 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=475888 H8S71_RS10875 WP_004399067.1 2162000..2162620(+) (recU) [Bacillus subtilis subsp. subtilis strain ONU 559]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=475888 H8S71_RS10875 WP_004399067.1 2162000..2162620(+) (recU) [Bacillus subtilis subsp. subtilis strain ONU 559]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1