Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   H8S71_RS07790 Genome accession   NZ_CP060417
Coordinates   1488834..1489112 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis subsp. subtilis strain ONU 559     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1483834..1494112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H8S71_RS07770 (H8S71_07765) panEB 1485022..1485933 (+) 912 WP_032725622.1 ketopantoate reductase family protein -
  H8S71_RS07775 (H8S71_07770) ampS 1485967..1487199 (-) 1233 WP_003232341.1 aminopeptidase -
  H8S71_RS07780 (H8S71_07775) ykpC 1487308..1487442 (-) 135 WP_003238865.1 protein YkpC -
  H8S71_RS07785 (H8S71_07780) mreBH 1487543..1488550 (-) 1008 WP_161985969.1 cell shape-determining protein MreBH -
  H8S71_RS07790 (H8S71_07785) abrB 1488834..1489112 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  H8S71_RS07795 (H8S71_07790) kinC 1489302..1490588 (+) 1287 WP_021479369.1 two-component sensor histidine kinase KinC -
  H8S71_RS07800 (H8S71_07795) ykqA 1490604..1491431 (+) 828 WP_064671341.1 gamma-glutamylcyclotransferase -
  H8S71_RS07805 (H8S71_07800) ktrC 1491494..1492159 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  H8S71_RS07810 (H8S71_07805) ade 1492315..1494048 (+) 1734 WP_049139897.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=475883 H8S71_RS07790 WP_003244728.1 1488834..1489112(+) (abrB) [Bacillus subtilis subsp. subtilis strain ONU 559]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=475883 H8S71_RS07790 WP_003244728.1 1488834..1489112(+) (abrB) [Bacillus subtilis subsp. subtilis strain ONU 559]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576