Detailed information
Bioinformatically predicted
Overview
| Name | comGE | Type | Machinery gene |
| Locus tag | CVCAS_RS10710 | Genome accession | NC_017486 |
| Coordinates | 2144136..2144432 (-) | Length | 98 a.a. |
| NCBI ID | WP_010906316.1 | Uniprot ID | A0A3N6L9Y1 |
| Organism | Lactococcus lactis subsp. lactis CV56 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2141123..2181769 | 2144136..2144432 | within | 0 |
Gene organization within MGE regions
Location: 2141123..2181769
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CVCAS_RS10685 (CVCAS_2098) | - | 2141123..2141860 (-) | 738 | WP_003129989.1 | metal ABC transporter ATP-binding protein | - |
| CVCAS_RS10690 (CVCAS_2099) | - | 2142037..2142879 (-) | 843 | WP_003129990.1 | metal ABC transporter substrate-binding protein | - |
| CVCAS_RS10695 (CVCAS_2100) | - | 2142876..2143313 (-) | 438 | WP_003129992.1 | zinc-dependent MarR family transcriptional regulator | - |
| CVCAS_RS10700 (CVCAS_2101) | comGG | 2143395..2143688 (-) | 294 | WP_043991170.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| CVCAS_RS10705 (CVCAS_2102) | comGF | 2143727..2144173 (-) | 447 | WP_029344525.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| CVCAS_RS10710 (CVCAS_2103) | comGE | 2144136..2144432 (-) | 297 | WP_010906316.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| CVCAS_RS10715 (CVCAS_2104) | comGD | 2144404..2144835 (-) | 432 | WP_014570794.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| CVCAS_RS10720 (CVCAS_2105) | comGC | 2144795..2145064 (-) | 270 | WP_003129998.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| CVCAS_RS10725 (CVCAS_2106) | - | 2145211..2145735 (-) | 525 | WP_014570795.1 | GNAT family N-acetyltransferase | - |
| CVCAS_RS10730 (CVCAS_2107) | - | 2145814..2146593 (-) | 780 | WP_014570796.1 | peptidoglycan amidohydrolase family protein | - |
| CVCAS_RS10735 (CVCAS_2108) | - | 2146593..2146892 (-) | 300 | WP_014570797.1 | phage holin | - |
| CVCAS_RS10740 (CVCAS_2109) | - | 2146905..2147255 (-) | 351 | WP_014570798.1 | hypothetical protein | - |
| CVCAS_RS10745 (CVCAS_2110) | - | 2147268..2147504 (-) | 237 | WP_014570799.1 | hypothetical protein | - |
| CVCAS_RS12920 (CVCAS_2111) | - | 2147516..2151601 (-) | 4086 | WP_193363677.1 | hypothetical protein | - |
| CVCAS_RS10760 (CVCAS_2112) | - | 2151580..2153109 (-) | 1530 | WP_014570562.1 | distal tail protein Dit | - |
| CVCAS_RS10765 (CVCAS_2113) | - | 2153119..2155332 (-) | 2214 | WP_014570561.1 | phage tail tape measure protein | - |
| CVCAS_RS10770 (CVCAS_2114) | - | 2155322..2156029 (-) | 708 | WP_014570560.1 | Gp15 family bacteriophage protein | - |
| CVCAS_RS10775 (CVCAS_2115) | - | 2156045..2156452 (-) | 408 | WP_003131323.1 | hypothetical protein | - |
| CVCAS_RS10780 (CVCAS_2116) | - | 2156509..2156985 (-) | 477 | WP_014570559.1 | phage tail tube protein | - |
| CVCAS_RS10785 (CVCAS_2117) | - | 2156996..2157430 (-) | 435 | WP_014570558.1 | minor capsid protein | - |
| CVCAS_RS10790 (CVCAS_2118) | - | 2157430..2157759 (-) | 330 | WP_003131320.1 | hypothetical protein | - |
| CVCAS_RS10795 (CVCAS_2119) | - | 2157756..2158100 (-) | 345 | WP_014570557.1 | putative minor capsid protein | - |
| CVCAS_RS10800 (CVCAS_2120) | - | 2158090..2158491 (-) | 402 | WP_014570556.1 | hypothetical protein | - |
| CVCAS_RS10805 (CVCAS_2121) | - | 2158565..2158801 (-) | 237 | WP_014570555.1 | Ig-like domain-containing protein | - |
| CVCAS_RS10810 (CVCAS_2122) | - | 2158830..2159747 (-) | 918 | WP_003131315.1 | hypothetical protein | - |
| CVCAS_RS10815 (CVCAS_2123) | - | 2159762..2160826 (-) | 1065 | WP_014570554.1 | XkdF-like putative serine protease domain-containing protein | - |
| CVCAS_RS10820 (CVCAS_2124) | - | 2160842..2161672 (-) | 831 | WP_014570553.1 | phage minor head protein | - |
| CVCAS_RS10825 (CVCAS_2125) | - | 2161665..2163194 (-) | 1530 | WP_014570552.1 | phage portal protein | - |
| CVCAS_RS10830 (CVCAS_2126) | terL | 2163207..2164658 (-) | 1452 | WP_014570551.1 | phage terminase large subunit | - |
| CVCAS_RS10835 (CVCAS_2127) | - | 2164639..2165136 (-) | 498 | WP_014570801.1 | hypothetical protein | - |
| CVCAS_RS10840 (CVCAS_2128) | - | 2165165..2166322 (-) | 1158 | Protein_2112 | DNA modification methylase | - |
| CVCAS_RS10845 (CVCAS_2129) | - | 2166799..2167221 (-) | 423 | WP_014570802.1 | RinA family protein | - |
| CVCAS_RS13330 (CVCAS_2130) | - | 2167299..2167460 (-) | 162 | WP_003131301.1 | hypothetical protein | - |
| CVCAS_RS10850 | - | 2167589..2167783 (-) | 195 | WP_023349206.1 | DUF1660 domain-containing protein | - |
| CVCAS_RS10855 (CVCAS_2131) | - | 2167780..2167998 (-) | 219 | WP_014570803.1 | hypothetical protein | - |
| CVCAS_RS10860 (CVCAS_2132) | - | 2168059..2168382 (-) | 324 | WP_014570804.1 | DUF1140 family protein | - |
| CVCAS_RS10865 (CVCAS_2133) | - | 2168385..2168756 (-) | 372 | WP_014570805.1 | hypothetical protein | - |
| CVCAS_RS13335 (CVCAS_2134) | - | 2168749..2168901 (-) | 153 | WP_014570806.1 | hypothetical protein | - |
| CVCAS_RS10875 (CVCAS_2135) | - | 2168933..2169184 (-) | 252 | WP_014570807.1 | hypothetical protein | - |
| CVCAS_RS10880 (CVCAS_2136) | - | 2169181..2169369 (-) | 189 | WP_014570808.1 | hypothetical protein | - |
| CVCAS_RS13540 (CVCAS_2137) | - | 2169387..2169749 (-) | 363 | WP_014570809.1 | hypothetical protein | - |
| CVCAS_RS10890 (CVCAS_2138) | - | 2169753..2170172 (-) | 420 | WP_003129863.1 | dUTP diphosphatase | - |
| CVCAS_RS10895 (CVCAS_2139) | - | 2170169..2170843 (-) | 675 | WP_014570539.1 | DUF1642 domain-containing protein | - |
| CVCAS_RS10900 (CVCAS_2141) | - | 2170985..2171374 (-) | 390 | WP_014570537.1 | hypothetical protein | - |
| CVCAS_RS10905 (CVCAS_2142) | - | 2171386..2171661 (-) | 276 | WP_014570536.1 | hypothetical protein | - |
| CVCAS_RS10915 (CVCAS_2144) | - | 2171984..2172394 (-) | 411 | WP_014570810.1 | hypothetical protein | - |
| CVCAS_RS10920 (CVCAS_2145) | - | 2172407..2172649 (-) | 243 | WP_014570811.1 | L-rhamnose isomerase | - |
| CVCAS_RS10925 (CVCAS_2146) | - | 2172642..2173556 (-) | 915 | WP_014570812.1 | phage replisome organizer N-terminal domain-containing protein | - |
| CVCAS_RS10930 (CVCAS_2147) | - | 2173820..2174746 (-) | 927 | WP_014570813.1 | RecT family recombinase | - |
| CVCAS_RS10935 (CVCAS_2148) | - | 2174743..2175576 (-) | 834 | WP_014570814.1 | hypothetical protein | - |
| CVCAS_RS10940 (CVCAS_2149) | - | 2175679..2175927 (-) | 249 | WP_014570815.1 | hypothetical protein | - |
| CVCAS_RS13610 (CVCAS_2150) | - | 2175941..2176063 (-) | 123 | WP_014570816.1 | hypothetical protein | - |
| CVCAS_RS10945 | - | 2176060..2176242 (-) | 183 | WP_043991177.1 | hypothetical protein | - |
| CVCAS_RS10950 (CVCAS_2152) | - | 2176258..2176947 (-) | 690 | WP_014570818.1 | phage regulatory protein | - |
| CVCAS_RS10955 (CVCAS_2153) | - | 2177006..2177239 (-) | 234 | WP_014570819.1 | helix-turn-helix transcriptional regulator | - |
| CVCAS_RS10960 (CVCAS_2154) | - | 2177416..2177826 (+) | 411 | WP_014570820.1 | helix-turn-helix domain-containing protein | - |
| CVCAS_RS10965 (CVCAS_2155) | - | 2177837..2178421 (+) | 585 | WP_014570821.1 | hypothetical protein | - |
| CVCAS_RS10970 (CVCAS_2156) | - | 2178477..2179016 (+) | 540 | WP_014570822.1 | PH domain-containing protein | - |
| CVCAS_RS10975 (CVCAS_2157) | - | 2179142..2180599 (+) | 1458 | WP_014570823.1 | recombinase family protein | - |
| CVCAS_RS13080 | - | 2180596..2180736 (-) | 141 | WP_228777719.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 98 a.a. Molecular weight: 11076.95 Da Isoelectric Point: 6.4684
>NTDB_id=47587 CVCAS_RS10710 WP_010906316.1 2144136..2144432(-) (comGE) [Lactococcus lactis subsp. lactis CV56]
MENLKRKSVKAYLLLESLISIALLAFLVSFIVSSLVQVRQKDTEENQKIEALNVAQMAIESHLTELSINGSDIKIKENQN
LLIISNHGKEIMRLELQS
MENLKRKSVKAYLLLESLISIALLAFLVSFIVSSLVQVRQKDTEENQKIEALNVAQMAIESHLTELSINGSDIKIKENQN
LLIISNHGKEIMRLELQS
Nucleotide
Download Length: 297 bp
>NTDB_id=47587 CVCAS_RS10710 WP_010906316.1 2144136..2144432(-) (comGE) [Lactococcus lactis subsp. lactis CV56]
GTGGAAAATTTAAAAAGAAAATCAGTTAAGGCATATTTGCTTTTGGAAAGTTTAATTAGTATAGCTCTACTCGCTTTTCT
AGTCAGCTTTATCGTAAGTTCTCTTGTGCAAGTAAGACAAAAAGATACGGAAGAAAATCAAAAGATTGAAGCTTTAAACG
TGGCACAAATGGCGATTGAAAGTCACTTAACAGAATTATCAATCAACGGTTCTGATATAAAGATAAAAGAAAACCAAAAT
TTACTGATTATTAGTAATCATGGAAAGGAAATTATGCGACTTGAACTTCAAAGTTAA
GTGGAAAATTTAAAAAGAAAATCAGTTAAGGCATATTTGCTTTTGGAAAGTTTAATTAGTATAGCTCTACTCGCTTTTCT
AGTCAGCTTTATCGTAAGTTCTCTTGTGCAAGTAAGACAAAAAGATACGGAAGAAAATCAAAAGATTGAAGCTTTAAACG
TGGCACAAATGGCGATTGAAAGTCACTTAACAGAATTATCAATCAACGGTTCTGATATAAAGATAAAAGAAAACCAAAAT
TTACTGATTATTAGTAATCATGGAAAGGAAATTATGCGACTTGAACTTCAAAGTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGE | Lactococcus lactis subsp. cremoris KW2 |
68.041 |
98.98 |
0.673 |