Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   H8S71_RS05565 Genome accession   NZ_CP060417
Coordinates   1081030..1081608 (+) Length   192 a.a.
NCBI ID   WP_029317573.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain ONU 559     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1076030..1086608
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H8S71_RS05545 (H8S71_05540) hemAT 1076541..1077839 (-) 1299 WP_049140766.1 heme-based aerotactic transducer HemAT -
  H8S71_RS05550 (H8S71_05545) comW 1077978..1079507 (-) 1530 WP_169037402.1 FAD-dependent oxidoreductase -
  H8S71_RS05555 (H8S71_05550) yhxC 1079619..1080476 (+) 858 WP_021479616.1 SDR family oxidoreductase -
  H8S71_RS05560 (H8S71_05555) yhzC 1080504..1080737 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  H8S71_RS05565 (H8S71_05560) comK 1081030..1081608 (+) 579 WP_029317573.1 competence transcription factor ComK Regulator
  H8S71_RS05570 (H8S71_05565) yhxD 1081655..1082554 (-) 900 WP_041851019.1 SDR family oxidoreductase -
  H8S71_RS05575 (H8S71_05570) yhjA 1082771..1083040 (+) 270 WP_038829151.1 excalibur calcium-binding domain-containing protein -
  H8S71_RS05580 (H8S71_05575) yhjB 1083084..1084553 (-) 1470 WP_187002156.1 sodium:solute symporter -
  H8S71_RS05585 (H8S71_05580) yhjC 1084550..1084750 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  H8S71_RS05590 (H8S71_05585) - 1084949..1085320 (-) 372 WP_014476361.1 hypothetical protein -
  H8S71_RS05595 (H8S71_05590) yhjE 1085472..1086095 (+) 624 WP_187002157.1 TVP38/TMEM64 family protein -
  H8S71_RS05600 (H8S71_05595) lepB 1086097..1086603 (+) 507 WP_021479613.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22457.70 Da        Isoelectric Point: 7.7156

>NTDB_id=475869 H8S71_RS05565 WP_029317573.1 1081030..1081608(+) (comK) [Bacillus subtilis subsp. subtilis strain ONU 559]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSRIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=475869 H8S71_RS05565 WP_029317573.1 1081030..1081608(+) (comK) [Bacillus subtilis subsp. subtilis strain ONU 559]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTACTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAGAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCA
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACGATGGAGCTGC
CGATTTCCTATAATTCGTTCGAAAACCAGGTATACCGGACAGCGTGGCTCAGAACTAAATTCCAAGACAGAATCGACCAC
CGCGTTCCGAAAAGGCAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

99.479

100

0.995