Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   JS609_RS12920 Genome accession   NZ_CP071043
Coordinates   2516233..2517360 (+) Length   375 a.a.
NCBI ID   WP_141949616.1    Uniprot ID   -
Organism   Bacillus subtilis isolate ELA2001105     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2511233..2522360
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JS609_RS12890 (JS609_02541) - 2511265..2511840 (-) 576 WP_141949627.1 TetR/AcrR family transcriptional regulator -
  JS609_RS12895 (JS609_02542) - 2512416..2513252 (-) 837 WP_225722054.1 helix-turn-helix transcriptional regulator -
  JS609_RS12900 (JS609_02543) fabF 2513356..2514588 (+) 1233 WP_225722055.1 beta-ketoacyl-ACP synthase II -
  JS609_RS12905 (JS609_02544) - 2514760..2515002 (+) 243 WP_141949620.1 DUF255 domain-containing protein -
  JS609_RS12910 (JS609_02545) arsK 2514999..2515438 (-) 440 Protein_2500 ArsI/CadI family heavy metal resistance metalloenzyme -
  JS609_RS12915 (JS609_02546) arsR 2515497..2515814 (-) 318 WP_141949618.1 arsenical resistance operon transcriptional regulator ArsR -
  JS609_RS12920 (JS609_02547) rapC 2516233..2517360 (+) 1128 WP_141949616.1 response regulator aspartate phosphatase RapE Regulator
  JS609_RS12925 (JS609_02548) phrE 2517350..2517484 (+) 135 WP_014114495.1 phosphatase RapE inhibitor PhrE -
  JS609_RS12930 (JS609_02549) - 2517713..2519593 (+) 1881 WP_225722056.1 ribonuclease YeeF family protein -
  JS609_RS12935 (JS609_02550) - 2519598..2519897 (+) 300 WP_080529577.1 contact-dependent growth inhibition system immunity protein -
  JS609_RS12940 (JS609_02551) - 2519936..2520754 (-) 819 WP_225722057.1 N-acetylmuramoyl-L-alanine amidase -
  JS609_RS12945 - 2520799..2520939 (-) 141 Protein_2507 phage holin family protein -
  JS609_RS12950 (JS609_02552) - 2520966..2521151 (-) 186 Protein_2508 phage terminase large subunit -
  JS609_RS12955 (JS609_02553) terS 2521148..2521939 (-) 792 WP_080529579.1 phage terminase small subunit -
  JS609_RS12960 - 2522122..2522208 (+) 87 WP_073991391.1 YjcZ family sporulation protein -
  JS609_RS12965 (JS609_02554) - 2522249..2522341 (+) 93 WP_080019512.1 YjcZ family sporulation protein -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 44604.41 Da        Isoelectric Point: 7.5547

>NTDB_id=475856 JS609_RS12920 WP_141949616.1 2516233..2517360(+) (rapC) [Bacillus subtilis isolate ELA2001105]
MISITSAEVGMKINEWHRHIQKFNVTDAEMLKAEIERDIEVMEEDQDLLIYYQLMAFRHKIMLEYTLPSDENRIELSEYL
KKIEGHKKKLDNMRAYYYNFFRGMYEFRNGEYTKAITYYKKAERKIPTISDKIEKAEFYFKLSEVYYHMKMTHISMHYAE
LSYNIYKKHELYSVRRIQCHFVIAGNYDDLENHEKALPHLQEALKGAELLKSKNTHIYATAFFNLGNCYHKMDNLNKAAR
YIEQALVQYRKINSDVLPQAYHDLALIYFKQGKKEQAMDCFRKGIRSAVDFKDELFMNLFEALDVLYIRNGDTPKLLNIF
SRLENGKGYPYLEELALLGGNLFDYNGKIEDSIICFKKMVYAQKQISKGECMYEI

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=475856 JS609_RS12920 WP_141949616.1 2516233..2517360(+) (rapC) [Bacillus subtilis isolate ELA2001105]
TTGATATCAATCACATCAGCTGAAGTGGGAATGAAGATTAATGAATGGCATAGGCATATTCAAAAATTCAATGTTACGGA
TGCTGAAATGTTAAAGGCTGAAATAGAACGTGATATAGAGGTTATGGAAGAAGATCAAGACTTGCTTATTTATTATCAAC
TAATGGCCTTTCGACATAAAATCATGCTGGAGTATACTCTGCCATCTGATGAAAATCGAATTGAACTTTCAGAATATTTA
AAGAAAATCGAAGGGCATAAGAAGAAGCTAGACAATATGCGAGCGTATTATTATAACTTCTTCCGCGGGATGTATGAGTT
TAGAAACGGTGAATACACAAAGGCCATTACATATTACAAAAAAGCTGAACGCAAAATTCCAACGATCTCCGACAAGATTG
AAAAAGCTGAGTTTTATTTTAAGTTATCCGAAGTCTATTATCATATGAAAATGACTCACATCTCAATGCACTACGCTGAA
CTTTCATACAACATCTATAAAAAACATGAACTTTATTCTGTTCGGCGTATTCAGTGCCATTTTGTTATTGCTGGCAACTA
CGATGACCTTGAAAATCATGAAAAAGCTCTCCCCCACCTTCAAGAAGCTTTAAAAGGTGCCGAGCTGCTTAAAAGTAAAA
ATACTCACATCTACGCCACAGCATTTTTCAATCTCGGTAACTGCTATCACAAAATGGACAACTTAAATAAAGCTGCACGT
TATATCGAGCAGGCCTTGGTTCAATACAGAAAAATAAACTCTGACGTACTTCCGCAAGCTTATCACGACCTAGCGTTGAT
TTATTTTAAACAAGGCAAAAAAGAACAAGCAATGGATTGCTTCCGCAAAGGAATCAGAAGTGCTGTAGATTTTAAAGACG
AACTTTTTATGAACTTATTTGAAGCATTAGACGTTCTTTATATAAGAAATGGCGATACACCTAAACTCCTCAACATTTTT
TCTCGTTTAGAGAACGGCAAAGGATACCCTTATCTGGAAGAGCTGGCATTGTTAGGAGGCAACCTTTTCGATTATAATGG
AAAAATAGAGGATAGTATCATCTGTTTCAAGAAGATGGTATATGCTCAAAAGCAAATATCGAAAGGGGAATGCATGTATG
AAATCTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(4-64)

Tetratricopeptide repeat (TPR_8)

(259-286)

Tetratricopeptide repeat (TPR_12)

(184-246)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

41.161

100

0.416
  rapF Bacillus subtilis subsp. subtilis str. 168

38.462

100

0.387