Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   JS609_RS09070 Genome accession   NZ_CP071043
Coordinates   1742333..1742764 (+) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis isolate ELA2001105     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1737333..1747764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JS609_RS09050 (JS609_01787) spoVS 1737894..1738154 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  JS609_RS09055 (JS609_01788) tdh 1738420..1739463 (+) 1044 WP_225721991.1 L-threonine 3-dehydrogenase -
  JS609_RS09060 (JS609_01789) kbl 1739476..1740654 (+) 1179 WP_041336018.1 glycine C-acetyltransferase -
  JS609_RS09065 (JS609_01790) miaB 1740802..1742331 (+) 1530 WP_213414494.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  JS609_RS09070 (JS609_01791) ymcA 1742333..1742764 (+) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  JS609_RS09075 (JS609_01792) cotE 1743018..1743563 (+) 546 WP_003231833.1 outer spore coat protein CotE -
  JS609_RS09080 (JS609_01793) hexA 1743696..1746272 (+) 2577 WP_033883742.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=475828 JS609_RS09070 WP_003231834.1 1742333..1742764(+) (ymcA) [Bacillus subtilis isolate ELA2001105]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=475828 JS609_RS09070 WP_003231834.1 1742333..1742764(+) (ymcA) [Bacillus subtilis isolate ELA2001105]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCACGAAACCTTGCAAAAATGATCTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAAATGGAAGTAAATGACCTACTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1