Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   H7A79_RS00810 Genome accession   NZ_CP060414
Coordinates   179119..180855 (-) Length   578 a.a.
NCBI ID   WP_187000762.1    Uniprot ID   -
Organism   Neisseria musculi strain NW831     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 165878..184698 179119..180855 within 0


Gene organization within MGE regions


Location: 165878..184698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7A79_RS00745 (H7A79_0136) pth 165940..166515 (+) 576 WP_135036919.1 aminoacyl-tRNA hydrolase -
  H7A79_RS00750 (H7A79_0137) - 166981..168483 (-) 1503 WP_187000757.1 patatin-like phospholipase family protein -
  H7A79_RS00755 (H7A79_0138) plsY 168550..169182 (-) 633 WP_135036913.1 glycerol-3-phosphate 1-O-acyltransferase PlsY -
  H7A79_RS00760 (H7A79_0139) folB 169243..169593 (+) 351 WP_135036910.1 dihydroneopterin aldolase -
  H7A79_RS00765 - 170105..170332 (+) 228 WP_135036191.1 hypothetical protein -
  H7A79_RS00770 (H7A79_0140) - 170727..171551 (+) 825 WP_187000758.1 hypothetical protein -
  H7A79_RS00775 (H7A79_0141) - 171554..171865 (+) 312 WP_187000759.1 hypothetical protein -
  H7A79_RS00780 (H7A79_0142) - 172739..173422 (-) 684 WP_187000760.1 pseudouridine synthase -
  H7A79_RS00785 - 173924..174118 (-) 195 WP_353663628.1 IS3 family transposase -
  H7A79_RS00790 - 174563..174703 (-) 141 Protein_148 IS3 family transposase -
  H7A79_RS00795 (H7A79_0144) cas1 175326..176234 (+) 909 WP_187000332.1 type II CRISPR-associated endonuclease Cas1 -
  H7A79_RS00800 (H7A79_0145) cas2 176227..176553 (+) 327 WP_135033316.1 CRISPR-associated endonuclease Cas2 -
  H7A79_RS00805 - 178230..178871 (+) 642 Protein_151 IS1595 family transposase -
  H7A79_RS00810 (H7A79_0148) recD 179119..180855 (-) 1737 WP_187000762.1 exodeoxyribonuclease V subunit alpha Machinery gene
  H7A79_RS00815 (H7A79_0149) tpx 181230..181724 (-) 495 WP_135037469.1 thiol peroxidase -
  H7A79_RS00820 (H7A79_0150) - 181749..182354 (-) 606 WP_187000763.1 DUF4230 domain-containing protein -
  H7A79_RS00825 (H7A79_0151) lepA 182661..184454 (+) 1794 WP_135037475.1 translation elongation factor 4 -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 62488.26 Da        Isoelectric Point: 7.2634

>NTDB_id=475817 H7A79_RS00810 WP_187000762.1 179119..180855(-) (recD) [Neisseria musculi strain NW831]
MYPFNDNGYTQAADAAVALLQRHAPAEAETAAPYVYQLFEALSDGHAFIWLNDADTAALQQIPGIAGSSDMPLVIVGRRL
FLGRIWQLEHDLAREIVRLAAAETQPVDWMQAGQNLAQWFDGANSEGQRDAAALSLLQPFMLISGGPGTGKTTTVAKLLA
LLCSNAGTLPRIALAAPTGKAAAHMARALHRAVCDFKPPEPVCRHLLQLEGQTVHRLLKLHPPQMQPAFHSGQPLPLDVL
VIDEASMLDLALMLQLLRAIPSGCRVILLGDENQLPSVGAGAVLAELAQETLLNTTTAQELSVILPQHGFKVGSNPPPLS
ANTSRLQFSHRFGSDSGIGCLAHAVIAGDAESAWAQFARFPAALGVCASGIKQQVEAFYEKQAAYWQAVASGDAGQAFRR
HTDTVVLAARREDAAAFNEAYRRCLQRHGLARADAPWFAGQIVMVLRNDYTLDLFNGDIGLILPDHNRPDTLAAHFPAAN
GFRSVSLSRLPAHETAFAVTVHKSQGSEYGEVWLLPPAANGSPHGLSRALLYTAVTRARERFVFWGGRLAFQTACATQEN
RRSALREMINRETAKSRK

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=475817 H7A79_RS00810 WP_187000762.1 179119..180855(-) (recD) [Neisseria musculi strain NW831]
ATGTATCCCTTCAATGATAACGGCTACACTCAGGCGGCAGATGCCGCCGTTGCGCTGTTGCAGCGGCACGCGCCTGCAGA
AGCCGAAACGGCCGCCCCCTATGTATATCAACTGTTTGAAGCGCTTTCAGATGGCCACGCTTTTATTTGGCTCAACGATG
CCGATACCGCTGCTTTGCAGCAGATACCGGGCATAGCCGGCAGCAGCGATATGCCGCTGGTGATTGTGGGCAGGCGGCTG
TTTCTCGGCCGGATATGGCAACTGGAGCACGACCTGGCGCGGGAGATCGTGCGCCTGGCCGCAGCGGAAACCCAACCCGT
TGATTGGATGCAGGCCGGGCAGAATCTGGCGCAATGGTTTGACGGCGCAAACAGCGAAGGCCAACGCGATGCCGCCGCAC
TCTCTCTGCTGCAACCGTTTATGCTCATCAGCGGCGGGCCGGGCACGGGGAAAACCACCACCGTGGCCAAACTTCTGGCG
CTGCTGTGCAGCAATGCCGGTACATTGCCGCGCATTGCCTTGGCCGCCCCCACCGGCAAGGCTGCCGCCCATATGGCGCG
CGCGCTGCACCGCGCCGTCTGCGATTTCAAACCGCCCGAGCCTGTCTGCCGCCATCTGCTGCAACTCGAGGGGCAAACCG
TACACCGCCTGCTGAAGCTGCACCCGCCGCAGATGCAGCCTGCTTTCCACAGCGGGCAGCCGCTGCCGCTGGATGTGTTG
GTTATAGATGAAGCTTCAATGCTCGACCTTGCCCTCATGCTGCAACTGCTGCGTGCCATACCTTCGGGGTGCCGCGTGAT
TCTGTTGGGCGATGAAAACCAACTGCCTTCGGTAGGCGCAGGCGCGGTTTTGGCCGAACTGGCGCAAGAAACCCTTTTAA
ACACCACCACTGCGCAAGAATTATCGGTCATACTGCCGCAACACGGCTTCAAAGTCGGCAGCAACCCGCCACCCTTGTCG
GCCAACACCTCCCGCCTGCAGTTCAGCCACCGCTTCGGCAGCGACAGCGGCATCGGCTGCCTGGCCCATGCCGTTATAGC
GGGCGATGCAGAAAGCGCATGGGCGCAATTTGCCCGTTTTCCCGCAGCACTCGGCGTGTGCGCAAGCGGCATCAAACAAC
AGGTCGAAGCTTTTTATGAAAAACAGGCCGCCTATTGGCAGGCAGTAGCTTCGGGCGATGCCGGACAAGCGTTCCGCCGC
CACACCGACACGGTGGTGCTGGCAGCCCGGCGGGAAGATGCCGCCGCATTCAACGAAGCCTACCGCCGCTGTCTGCAGCG
GCATGGTTTGGCACGCGCCGATGCACCGTGGTTTGCAGGGCAGATAGTGATGGTGTTGCGCAACGATTACACGCTGGATT
TATTTAACGGCGACATCGGCCTGATTCTCCCCGACCACAACCGTCCCGACACGCTGGCTGCGCACTTTCCTGCCGCAAAC
GGGTTCCGATCCGTTTCCCTGAGCCGCCTGCCCGCCCACGAAACCGCATTTGCCGTTACCGTGCACAAAAGTCAGGGTTC
GGAATACGGCGAAGTCTGGCTGCTGCCTCCGGCCGCAAACGGCAGCCCGCACGGCCTGAGCCGCGCCCTACTCTACACCG
CCGTAACCCGCGCCCGCGAACGGTTTGTATTTTGGGGCGGCCGCCTTGCTTTTCAGACGGCCTGCGCCACACAAGAAAAC
CGCCGCAGCGCATTGCGCGAAATGATAAACAGAGAAACAGCCAAAAGCAGAAAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(125-304)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(496-541)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae strain FA1090

57.754

97.059

0.561