Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   JS609_RS08085 Genome accession   NZ_CP071043
Coordinates   1540722..1541747 (+) Length   341 a.a.
NCBI ID   WP_029317763.1    Uniprot ID   -
Organism   Bacillus subtilis isolate ELA2001105     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1535722..1546747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JS609_RS08050 (JS609_01584) ylbE 1536022..1536261 (+) 240 WP_003232231.1 YlbE-like family protein -
  JS609_RS08055 (JS609_01585) ylbF 1536377..1536826 (+) 450 WP_225721983.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  JS609_RS08060 (JS609_01586) ylbG 1536881..1537153 (+) 273 WP_015715839.1 YlbG family protein -
  JS609_RS08065 (JS609_01587) rsmD 1537476..1538030 (+) 555 WP_225721984.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  JS609_RS08070 (JS609_01588) coaD 1538035..1538520 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  JS609_RS08075 (JS609_01589) spoVV 1538531..1539757 (-) 1227 WP_015252149.1 dipicolinic acid transporter SpoVV -
  JS609_RS08080 (JS609_01590) ylbK 1539938..1540720 (+) 783 WP_003232221.1 patatin family protein -
  JS609_RS08085 (JS609_01591) sepM 1540722..1541747 (+) 1026 WP_029317763.1 protease DdcP Regulator
  JS609_RS08090 (JS609_01592) tmcAL 1541764..1543011 (-) 1248 WP_225721985.1 nucleotidyltransferase -
  JS609_RS08095 (JS609_01593) - 1543008..1543193 (-) 186 WP_003232215.1 hypothetical protein -
  JS609_RS08100 (JS609_01594) ylbN 1543221..1543739 (+) 519 WP_014479718.1 YceD family protein -
  JS609_RS08105 (JS609_01595) rpmF 1543761..1543940 (+) 180 WP_003154457.1 50S ribosomal protein L32 -
  JS609_RS08110 (JS609_01596) gerR 1544087..1544668 (+) 582 WP_015383592.1 sporulation specific transcriptional regulator GerR -
  JS609_RS08115 (JS609_01597) ylbP 1544725..1545207 (-) 483 WP_014476736.1 N-acetyltransferase -
  JS609_RS08120 (JS609_01598) panEA 1545367..1546263 (+) 897 WP_213414467.1 2-dehydropantoate 2-reductase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37699.28 Da        Isoelectric Point: 6.5347

>NTDB_id=475817 JS609_RS08085 WP_029317763.1 1540722..1541747(+) (sepM) [Bacillus subtilis isolate ELA2001105]
MLRKKHFSWMLVILILIAFLSFIKLPYYITKPGEATELASLIKVEGGYPEKGSLSLMTVKVGPANPFTYVWAKMHPYYEI
VPDESIKEEGESDKEYMKRQLQMMKSSQENAVIAAYQKAGKKVSYSFNGIYASSVVENMPAKGKIEVGDKIISADGKNYQ
SAEKLIDYISSKKAGDKVTLKIEREEKEKRVTLTLKQFPDEPDRAGIGVSLYTDRNVKVEPDIDFEIENIGGPSAGLMMS
LEIYNQLTKPDETKGYDIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGASNSDYKNAVKTAKDIDSNMKI
VPVDTMQDAIDYLNKLKAKST

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=475817 JS609_RS08085 WP_029317763.1 1540722..1541747(+) (sepM) [Bacillus subtilis isolate ELA2001105]
TTGCTACGTAAAAAACATTTTAGCTGGATGCTCGTCATCCTCATACTGATCGCCTTTTTATCATTTATAAAACTTCCATA
CTATATTACAAAACCGGGAGAAGCGACAGAGCTTGCTTCATTGATAAAAGTGGAGGGAGGCTACCCGGAAAAAGGAAGTC
TGTCCTTAATGACTGTTAAAGTGGGACCGGCTAATCCGTTTACATATGTGTGGGCAAAGATGCACCCTTATTATGAAATT
GTTCCTGATGAGAGCATTAAGGAGGAAGGCGAGTCAGATAAGGAGTATATGAAAAGACAGCTCCAAATGATGAAAAGCTC
GCAAGAAAATGCGGTTATAGCCGCCTATCAAAAGGCAGGAAAAAAAGTCAGCTATTCCTTTAACGGCATATACGCAAGCT
CTGTTGTAGAAAACATGCCGGCAAAAGGGAAAATAGAAGTCGGTGATAAAATCATCAGCGCAGACGGCAAAAACTATCAG
TCTGCTGAAAAGCTGATTGATTATATCAGCAGCAAAAAAGCGGGAGATAAAGTCACGTTAAAGATCGAAAGAGAAGAAAA
AGAAAAGCGTGTCACCCTTACGTTAAAACAATTTCCTGATGAGCCGGATCGGGCAGGAATCGGAGTTTCGCTTTATACAG
ACAGAAACGTGAAGGTAGAGCCTGATATTGATTTTGAAATCGAAAATATTGGCGGCCCGTCAGCAGGGTTAATGATGTCC
CTTGAAATCTATAATCAGCTGACAAAACCAGACGAAACAAAAGGCTACGATATTGCGGGAACAGGTACCATTGATGTTGA
CGGAAAAGTAGGCCCGATCGGCGGCATTGATCAAAAAGTCGTCGCCGCAGACAAAGCCGGAAAAGATATTTTCTTCGCGC
CAAATCAAAACGGCGCCAGCAATTCCGATTATAAGAACGCAGTAAAAACAGCAAAAGATATTGATTCAAATATGAAGATT
GTGCCTGTTGATACCATGCAGGATGCGATTGATTATTTGAATAAGCTGAAAGCGAAAAGCACCTGA

Domains

Predicted by InterProScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(232-331)

PDZ domain (PDZ_2)

(128-195)

Peptidase family M50 (Peptidase_M50)

(38-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

39.143

100

0.402