Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   JS609_RS08055 Genome accession   NZ_CP071043
Coordinates   1536377..1536826 (+) Length   149 a.a.
NCBI ID   WP_225721983.1    Uniprot ID   -
Organism   Bacillus subtilis isolate ELA2001105     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1531377..1541826
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JS609_RS08015 (JS609_01577) ctaE 1531394..1532017 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  JS609_RS08020 (JS609_01578) ctaF 1532020..1532352 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  JS609_RS08025 (JS609_01579) ctaG 1532379..1533272 (+) 894 WP_015252153.1 cytochrome c oxidase assembly factor CtaG -
  JS609_RS08030 (JS609_01580) ylbA 1533304..1533666 (-) 363 WP_003232238.1 YugN family protein -
  JS609_RS08035 (JS609_01581) ylbB 1533806..1534252 (+) 447 WP_003221362.1 CBS domain-containing protein -
  JS609_RS08040 (JS609_01582) ylbC 1534336..1535376 (+) 1041 WP_014479713.1 CAP domain-containing protein -
  JS609_RS08045 (JS609_01583) ylbD 1535608..1536006 (+) 399 WP_003232233.1 YlbD family protein -
  JS609_RS08050 (JS609_01584) ylbE 1536022..1536261 (+) 240 WP_003232231.1 YlbE-like family protein -
  JS609_RS08055 (JS609_01585) ylbF 1536377..1536826 (+) 450 WP_225721983.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  JS609_RS08060 (JS609_01586) ylbG 1536881..1537153 (+) 273 WP_015715839.1 YlbG family protein -
  JS609_RS08065 (JS609_01587) rsmD 1537476..1538030 (+) 555 WP_225721984.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  JS609_RS08070 (JS609_01588) coaD 1538035..1538520 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  JS609_RS08075 (JS609_01589) spoVV 1538531..1539757 (-) 1227 WP_015252149.1 dipicolinic acid transporter SpoVV -
  JS609_RS08080 (JS609_01590) ylbK 1539938..1540720 (+) 783 WP_003232221.1 patatin family protein -
  JS609_RS08085 (JS609_01591) sepM 1540722..1541747 (+) 1026 WP_029317763.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16943.99 Da        Isoelectric Point: 4.9284

>NTDB_id=475816 JS609_RS08055 WP_225721983.1 1536377..1536826(+) (ylbF) [Bacillus subtilis isolate ELA2001105]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCSSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=475816 JS609_RS08055 WP_225721983.1 1536377..1536826(+) (ylbF) [Bacillus subtilis isolate ELA2001105]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGATAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCAGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

99.329

100

0.993