Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   H8N02_RS16105 Genome accession   NZ_CP060413
Coordinates   3380867..3381265 (-) Length   132 a.a.
NCBI ID   WP_210606729.1    Uniprot ID   -
Organism   Comamonas kerstersii strain 3132976     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3375867..3386265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H8N02_RS16090 (H8N02_16100) - 3377653..3379887 (-) 2235 WP_151043797.1 methyl-accepting chemotaxis protein -
  H8N02_RS16095 (H8N02_16105) - 3379913..3380455 (-) 543 WP_077345142.1 chemotaxis protein CheW -
  H8N02_RS16100 (H8N02_16110) - 3380467..3380838 (-) 372 WP_151043793.1 response regulator -
  H8N02_RS16105 (H8N02_16115) pilG 3380867..3381265 (-) 399 WP_210606729.1 response regulator Regulator
  H8N02_RS16110 (H8N02_16120) thiD 3381542..3382546 (+) 1005 WP_210606730.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  H8N02_RS16115 (H8N02_16125) hemL 3382530..3383834 (+) 1305 WP_210606731.1 glutamate-1-semialdehyde 2,1-aminomutase -
  H8N02_RS16120 (H8N02_16130) - 3383986..3385461 (-) 1476 WP_210606732.1 amino acid permease -
  H8N02_RS16125 (H8N02_16135) - 3385764..3386213 (-) 450 WP_210606733.1 c-type cytochrome -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14518.79 Da        Isoelectric Point: 7.7782

>NTDB_id=475814 H8N02_RS16105 WP_210606729.1 3380867..3381265(-) (pilG) [Comamonas kerstersii strain 3132976]
MSTAGASFRVLVVDDSNTIRRSAEIFLKQGGHEVLLAEDGFDALAKVNDFRPHLIFCDILMPKLDGYQTCAIIKRNAHFA
DTPVVMLSSKDGVFDKARGRMVGCQDYLTKPFTKDQLLKAVQQLGKVESVAG

Nucleotide


Download         Length: 399 bp        

>NTDB_id=475814 H8N02_RS16105 WP_210606729.1 3380867..3381265(-) (pilG) [Comamonas kerstersii strain 3132976]
TTGAGTACAGCCGGAGCATCTTTCAGAGTGTTGGTGGTGGATGACAGCAACACCATTCGTCGCAGTGCAGAGATTTTTCT
CAAGCAGGGAGGGCATGAGGTCCTGCTTGCCGAAGATGGCTTTGATGCACTGGCCAAGGTGAATGATTTCAGGCCGCATC
TGATCTTCTGCGACATCCTGATGCCCAAGCTCGATGGCTATCAGACCTGCGCCATCATCAAGCGCAACGCACATTTCGCA
GACACGCCCGTGGTGATGCTTTCATCCAAGGATGGCGTGTTTGACAAGGCACGCGGGCGCATGGTCGGCTGCCAGGACTA
TCTCACCAAACCATTTACCAAGGACCAGCTGCTCAAGGCTGTGCAGCAGCTTGGCAAGGTCGAATCGGTAGCAGGCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

54.472

93.182

0.508