Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   JS609_RS06110 Genome accession   NZ_CP071043
Coordinates   1187982..1188899 (+) Length   305 a.a.
NCBI ID   WP_003232954.1    Uniprot ID   A0A9W5LHY5
Organism   Bacillus subtilis isolate ELA2001105     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1182982..1193899
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JS609_RS06095 (JS609_01198) trpS 1183562..1184554 (-) 993 WP_003245134.1 tryptophan--tRNA ligase -
  JS609_RS06100 (JS609_01199) oppA 1185299..1186936 (+) 1638 WP_021479550.1 oligopeptide ABC transporter substrate-binding protein OppA -
  JS609_RS06105 (JS609_01200) oppB 1187043..1187978 (+) 936 WP_048654864.1 oligopeptide ABC transporter permease OppB -
  JS609_RS06110 (JS609_01201) amiD 1187982..1188899 (+) 918 WP_003232954.1 oligopeptide ABC transporter permease OppC Regulator
  JS609_RS06115 (JS609_01202) oppD 1188904..1189980 (+) 1077 WP_077670618.1 oligopeptide ABC transporter ATP-binding protein OppD -
  JS609_RS06120 (JS609_01203) oppF 1189982..1190899 (+) 918 WP_003245567.1 oligopeptide ABC transporter ATP-binding protein OppF -
  JS609_RS06125 (JS609_01204) yjbB 1191007..1192224 (+) 1218 WP_213414521.1 MFS transporter -
  JS609_RS06130 (JS609_01205) yjbC 1192388..1192966 (+) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  JS609_RS06135 (JS609_01206) spx 1193147..1193542 (+) 396 WP_014476435.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33621.12 Da        Isoelectric Point: 10.2873

>NTDB_id=475800 JS609_RS06110 WP_003232954.1 1187982..1188899(+) (amiD) [Bacillus subtilis isolate ELA2001105]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=475800 JS609_RS06110 WP_003232954.1 1187982..1188899(+) (amiD) [Bacillus subtilis isolate ELA2001105]
ATGCAGAACATTCCAAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATCATTATCGTACTTATTA
TCCTTATGGCAATTTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTCTTAAATGCGGATAAGCCGCCT
TCAAAAGATCACTGGTTCGGAACAGATGATCTTGGACGGGACATTTTCGTCCGTACATGGGTAGGGGCGCGTATCTCAAT
CTTTATCGGTGTTGCAGCTGCTGTTCTCGATTTGCTGATCGGCGTTATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGCA
GAACGGACGAAATCATGATGCGTATCGCTGATATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGTCTATTTACGATTATTATTGCCATGACGATTACAGGCTGGATTAATATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAGGAGTATGTGCTTGCTTCACAGACACTGGGTGCAAAAACATCCCGTCTTCTGTTTA
AACATATCGTGCCAAACGCAATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCAATTTTCACAGAAGCC
TTTTTAAGTTATTTGGGACTTGGTGTTCCGGCTCCGCTGGCGAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGTTTCAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(121-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9W5LHY5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

35.922

100

0.364
  amiD Streptococcus thermophilus LMD-9

35.922

100

0.364