Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   JS609_RS04205 Genome accession   NZ_CP071043
Coordinates   826315..827031 (+) Length   238 a.a.
NCBI ID   WP_225721909.1    Uniprot ID   -
Organism   Bacillus subtilis isolate ELA2001105     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 821315..832031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JS609_RS04190 (JS609_00825) yfkQ 821392..822933 (-) 1542 WP_213415015.1 spore germination protein -
  JS609_RS04195 (JS609_00826) treP 823126..824538 (+) 1413 WP_033883257.1 PTS system trehalose-specific EIIBC component -
  JS609_RS04200 (JS609_00827) treC 824609..826294 (+) 1686 WP_225721908.1 alpha,alpha-phosphotrehalase -
  JS609_RS04205 (JS609_00828) treR 826315..827031 (+) 717 WP_225721909.1 trehalose operon repressor Regulator
  JS609_RS04210 (JS609_00829) hypO 827171..827836 (+) 666 WP_003243096.1 NAD(P)H-dependent oxidoreductase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27887.86 Da        Isoelectric Point: 7.1737

>NTDB_id=475781 JS609_RS04205 WP_225721909.1 826315..827031(+) (treR) [Bacillus subtilis isolate ELA2001105]
MKVNKFITIYKDIAQQIEGGRWKAEEILPSEHELTAQYGTSRETVRKALHMLAQNGYIQKIRGKGSVVLNREKMQFPVSG
LVSFKELAQTLGKETKTTVHKFGLEPPSELIQKQLRANLDDDMWEVIRSRKIDGEHVILDRDYFFRKHVPHLTKEICENS
IYEYIEGELGLSISYAQKEIVAEPCTDEDRELLDLRGYDHMVVVRNYVFLEDTSLFQYTESRHRLDKFRFVDFARRGK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=475781 JS609_RS04205 WP_225721909.1 826315..827031(+) (treR) [Bacillus subtilis isolate ELA2001105]
ATGAAGGTGAATAAATTCATCACAATTTATAAAGACATCGCACAGCAAATTGAAGGCGGCCGATGGAAAGCGGAGGAGAT
TCTTCCGTCTGAACATGAGTTGACCGCACAGTACGGTACATCAAGAGAAACGGTCCGAAAGGCGCTTCATATGCTCGCGC
AAAACGGTTATATCCAGAAAATCAGGGGAAAAGGCTCCGTCGTGCTCAATCGTGAAAAAATGCAGTTTCCCGTTTCGGGC
CTTGTCAGCTTCAAGGAGCTCGCGCAAACGCTTGGCAAAGAAACGAAAACAACTGTACACAAATTCGGGCTGGAGCCTCC
GTCAGAGCTGATCCAAAAACAGCTCCGGGCCAATCTAGATGACGACATGTGGGAAGTCATCAGGTCTAGAAAGATTGACG
GGGAACATGTGATTTTGGACAGGGATTATTTTTTCAGAAAGCATGTCCCTCACCTGACGAAAGAAATTTGTGAAAACTCC
ATATATGAATATATAGAAGGAGAGCTCGGTCTTTCGATCAGTTACGCCCAAAAAGAAATTGTCGCCGAGCCGTGTACGGA
CGAGGACAGAGAGCTGCTCGATTTACGCGGCTATGACCATATGGTCGTGGTGAGAAACTACGTCTTTTTGGAGGATACCA
GTTTGTTTCAATATACGGAAAGCAGACACCGTCTCGACAAATTCCGATTTGTTGATTTTGCGCGGCGGGGGAAATGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(8-68)

UTRA domain (UTRA)

(91-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

42.308

98.319

0.416