Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   JS609_RS02415 Genome accession   NZ_CP071043
Coordinates   470872..471306 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis isolate ELA2001105     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 465872..476306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JS609_RS02385 (JS609_00468) ydaD 466521..467381 (+) 861 WP_003234401.1 SDR family oxidoreductase -
  JS609_RS02390 (JS609_00469) lyxE 467397..467900 (+) 504 WP_021481729.1 D-lyxose ketol-isomerase -
  JS609_RS02395 (JS609_00470) ydaF 467986..468537 (+) 552 WP_038427389.1 GNAT family N-acetyltransferase -
  JS609_RS02400 (JS609_00471) ydaG 468615..469037 (+) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  JS609_RS02405 (JS609_00473) amj 469543..470352 (+) 810 WP_213414876.1 lipid II flippase Amj family protein -
  JS609_RS02410 (JS609_00474) ydzA 470397..470687 (-) 291 WP_015252794.1 DUF3817 domain-containing protein -
  JS609_RS02415 (JS609_00475) lrpC 470872..471306 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  JS609_RS02420 (JS609_00476) topB 471371..473554 (+) 2184 WP_213414875.1 DNA topoisomerase III -
  JS609_RS02425 (JS609_00477) ephJ 473756..474844 (+) 1089 WP_029317314.1 hypothetical protein -
  JS609_RS02430 (JS609_00478) epsK 474825..475676 (+) 852 WP_213414874.1 GGDEF domain-containing protein -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=475776 JS609_RS02415 WP_003246585.1 470872..471306(+) (lrpC) [Bacillus subtilis isolate ELA2001105]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=475776 JS609_RS02415 WP_003246585.1 470872..471306(+) (lrpC) [Bacillus subtilis isolate ELA2001105]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTGACAGAACGGGTAAGGCAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTTGGGCTTCCCGTTTCCTGTATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCAGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTTATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1