Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   JS608_RS20195 Genome accession   NZ_CP071042
Coordinates   4053142..4054272 (-) Length   376 a.a.
NCBI ID   WP_079004933.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens isolate ELA1901024     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 4048142..4059272
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JS608_RS20160 (JS608_04032) - 4048637..4048939 (-) 303 WP_225630116.1 hypothetical protein -
  JS608_RS20165 (JS608_04033) - 4048986..4049390 (-) 405 WP_003151203.1 Rrf2 family transcriptional regulator -
  JS608_RS20170 (JS608_04034) ureC 4049531..4051240 (-) 1710 WP_079004932.1 urease subunit alpha -
  JS608_RS20175 (JS608_04036) ureB 4051237..4051610 (-) 374 Protein_3940 urease subunit beta -
  JS608_RS20180 (JS608_04037) ureA 4051607..4051924 (-) 318 WP_003151198.1 urease subunit gamma -
  JS608_RS20185 (JS608_04038) - 4052278..4052466 (-) 189 WP_058906415.1 CsbD family protein -
  JS608_RS20190 (JS608_04039) - 4052540..4053019 (-) 480 WP_003151196.1 hypothetical protein -
  JS608_RS20195 (JS608_04040) rapC 4053142..4054272 (-) 1131 WP_079004933.1 tetratricopeptide repeat protein Regulator
  JS608_RS20200 (JS608_04041) moaA 4054463..4055488 (-) 1026 WP_079004934.1 GTP 3',8-cyclase MoaA -
  JS608_RS20205 (JS608_04042) fdhD 4055506..4056294 (-) 789 WP_014306001.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  JS608_RS20210 (JS608_04043) - 4056389..4056553 (-) 165 WP_003151191.1 hypothetical protein -
  JS608_RS20215 (JS608_04044) - 4056640..4057320 (-) 681 WP_015387578.1 VWA domain-containing protein -
  JS608_RS20220 (JS608_04045) - 4057630..4058316 (-) 687 WP_003151188.1 VWA domain-containing protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44946.12 Da        Isoelectric Point: 5.4431

>NTDB_id=475751 JS608_RS20195 WP_079004933.1 4053142..4054272(-) (rapC) [Bacillus amyloliquefaciens isolate ELA1901024]
MTAYEIPSSQVGVKINKWYKHILAFQAADAIKLKEEIDEDIQRMEEDQLLLLYYQLISYRHHIMLDYVKPECTEQSQIQY
SELQKTIESTDSISGLSEYYFHLFRGMYEFDHNNYVAAISFYRKAEKLLSFVEDDIERAEFHFKMSEVFYVMKQTHFSMN
HGIQALDTYMKHDFYRVRRIQCHFVISGNYIDCKNYDKALEHLDEALRLSLLEGQPRLIGSSLYNLGNCYAEKRDLDEAA
RYFRKAVPVFEEHQLEQLPKALFSLTHTLFRLHDDQAALTYYERGIMIAKERGDRFSLEKYKFLQALYLESLNMDLIHEV
FDYMNEKSLYVYIEDFALEAAVYTSAHEQYKEAAYFYEKAIRMREKIQKEQCLYDI

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=475751 JS608_RS20195 WP_079004933.1 4053142..4054272(-) (rapC) [Bacillus amyloliquefaciens isolate ELA1901024]
ATGACCGCATACGAGATTCCGTCATCTCAAGTTGGAGTCAAGATCAACAAATGGTACAAGCACATTTTAGCGTTTCAAGC
GGCTGATGCCATAAAGCTGAAAGAGGAAATTGATGAGGATATACAACGTATGGAGGAAGACCAGCTGCTGCTGTTATATT
ATCAGCTGATCAGCTACCGCCATCATATTATGCTTGATTACGTCAAGCCGGAATGCACCGAACAATCACAGATTCAGTAC
AGCGAGCTGCAAAAGACGATCGAAAGCACGGACAGCATATCGGGACTGTCTGAGTATTATTTCCATTTGTTCAGAGGGAT
GTATGAATTCGATCACAATAACTATGTTGCGGCTATTTCTTTTTACCGGAAAGCGGAAAAACTCCTTTCATTTGTCGAGG
ATGATATAGAGAGGGCGGAATTCCATTTCAAGATGTCTGAAGTTTTTTACGTCATGAAGCAGACTCATTTTTCCATGAAT
CACGGGATTCAGGCGCTGGATACGTATATGAAACACGATTTTTACAGAGTGCGGAGAATTCAATGCCATTTCGTCATTTC
AGGAAACTACATCGACTGCAAAAACTACGACAAAGCGCTTGAGCATTTAGACGAAGCCCTCCGCCTTTCTTTGCTTGAAG
GACAGCCCCGCCTGATCGGGTCTTCGCTTTACAATCTGGGGAATTGTTATGCTGAAAAGCGGGATCTGGATGAAGCGGCC
CGGTACTTTAGAAAAGCGGTTCCCGTTTTTGAAGAGCATCAGCTTGAACAGCTTCCGAAGGCGCTGTTCAGCTTAACGCA
CACCCTTTTCAGGCTGCATGATGACCAAGCGGCCCTTACCTATTATGAAAGAGGGATCATGATCGCGAAAGAACGCGGCG
ACCGATTCAGTTTAGAGAAGTATAAGTTTTTACAAGCGCTTTATTTGGAGTCACTCAATATGGATTTAATCCATGAAGTG
TTTGACTATATGAATGAAAAATCGCTGTATGTGTATATTGAAGATTTCGCCTTGGAGGCCGCCGTTTACACAAGCGCACA
TGAGCAATATAAAGAAGCGGCGTATTTTTATGAAAAAGCGATTCGCATGAGAGAAAAAATTCAAAAAGAACAGTGTTTAT
ACGATATATAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)

Anaphase-promoting complex subunit 5 (ANAPC5)

(314-373)

Tetratricopeptide repeat (TPR_12)

(192-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

41.842

100

0.423
  rapF Bacillus subtilis subsp. subtilis str. 168

40

99.734

0.399