Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   H8F26_RS01635 Genome accession   NZ_CP060396
Coordinates   342540..343790 (-) Length   416 a.a.
NCBI ID   WP_231605400.1    Uniprot ID   -
Organism   Synechococcus sp. CBW1006     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 337540..348790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H8F26_RS01610 (H8F26_01610) crtD 337641..339185 (+) 1545 WP_197157020.1 C-3',4' desaturase CrtD -
  H8F26_RS01615 (H8F26_01615) - 339196..340152 (-) 957 WP_197157022.1 prephenate/arogenate dehydrogenase -
  H8F26_RS01620 (H8F26_01620) - 340195..341667 (+) 1473 WP_197157024.1 helicase -
  H8F26_RS01625 (H8F26_01625) - 341697..341942 (+) 246 WP_197157026.1 DUF2839 domain-containing protein -
  H8F26_RS01630 (H8F26_01630) - 342088..342486 (+) 399 WP_197157028.1 DUF1815 family protein -
  H8F26_RS01635 (H8F26_01635) recA 342540..343790 (-) 1251 WP_231605400.1 recombinase RecA Machinery gene
  H8F26_RS01640 (H8F26_01640) - 344186..344905 (-) 720 WP_197158903.1 HAD family hydrolase -
  H8F26_RS01650 (H8F26_01650) - 345210..346937 (-) 1728 WP_231605402.1 AAA family ATPase -
  H8F26_RS01655 (H8F26_01655) - 347034..348122 (-) 1089 WP_370594723.1 LdpA C-terminal domain-containing domain -
  H8F26_RS01660 (H8F26_01660) - 348159..348620 (-) 462 WP_197158906.1 NAD(P)H-quinone oxidoreductase subunit N -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 43903.79 Da        Isoelectric Point: 5.6265

>NTDB_id=475689 H8F26_RS01635 WP_231605400.1 342540..343790(-) (recA) [Synechococcus sp. CBW1006]
MTPDSKAVSAASRSLEARSASERDKALGLVLNQIERNFGKGSIMRLGDASRMRVETVSTGALTLDLALGGGYPKGRVVEV
YGPESSGKTTLTLHAIAEVQRRGGVAAFVDAEHALDPVYAAALGVDIENLLVSQPDTGEMALEIVDQLVRSAAVDIVVID
SVAALTPRAEIEGEMGDLAVGSQARLMSQAMRKITGNIGKSGCTVIFLNQLRQKIGVTYGNPETTTGGNALKFYASVRLD
IRRIQTLKRGTEEYGIRAKVKVAKNKVAPPFRIAEFDILFGRGISTLGCLLDLAEEIGVVTRKGSWYSYEGDNIGQGRDN
TIIWLEQNPEQKERIEAITRQKLTEGSEVTANSLRPLAAAAKLSADLSDDPARALVEDLGAAPLELNAPAAAGSPAGATA
GTRSSSRSTAPAATDG

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=475689 H8F26_RS01635 WP_231605400.1 342540..343790(-) (recA) [Synechococcus sp. CBW1006]
ATGACCCCTGACTCCAAGGCCGTGTCCGCCGCCTCCCGCAGCCTCGAGGCCCGCTCCGCCAGCGAGCGTGACAAGGCGCT
GGGCCTGGTGCTGAACCAGATCGAGCGCAACTTCGGCAAGGGCTCGATCATGCGACTGGGCGACGCCTCCCGCATGCGGG
TGGAAACCGTCTCCACCGGCGCCCTGACCCTGGATCTGGCTCTGGGGGGCGGCTATCCCAAGGGCCGGGTGGTGGAGGTC
TATGGCCCTGAAAGTTCCGGCAAGACCACCCTCACGCTCCATGCCATCGCCGAGGTGCAACGCCGCGGTGGCGTTGCGGC
CTTCGTTGATGCCGAGCACGCGCTCGACCCGGTCTACGCCGCGGCCCTCGGAGTGGATATCGAGAACCTGCTGGTCTCCC
AGCCGGATACCGGTGAGATGGCCCTGGAGATCGTCGACCAGCTGGTGCGCTCAGCCGCCGTCGACATCGTCGTGATCGAT
TCGGTGGCGGCGTTGACGCCCCGGGCCGAAATTGAGGGAGAGATGGGCGATCTGGCGGTGGGCAGCCAGGCCCGCCTGAT
GAGTCAGGCGATGCGCAAGATCACCGGCAACATCGGCAAGTCCGGCTGCACGGTGATCTTCCTCAACCAGCTGCGGCAAA
AGATCGGTGTCACCTATGGCAATCCCGAAACCACCACCGGTGGGAATGCGCTGAAGTTCTACGCCTCGGTGCGGCTCGAC
ATCCGCCGGATCCAGACGCTCAAGCGCGGCACCGAGGAATACGGCATTCGCGCCAAGGTGAAGGTGGCCAAGAACAAGGT
GGCTCCACCCTTCCGCATCGCCGAGTTCGACATCCTGTTCGGCCGGGGCATCAGCACCCTCGGTTGCCTGCTGGATCTGG
CCGAGGAAATCGGGGTGGTGACGCGTAAGGGATCCTGGTACAGCTACGAGGGCGACAACATCGGCCAGGGCCGTGATAAC
ACCATCATCTGGCTGGAGCAGAACCCCGAGCAGAAGGAGCGGATCGAGGCGATCACCCGCCAGAAACTCACGGAAGGATC
GGAGGTGACGGCCAACTCGTTGCGGCCCCTGGCGGCGGCAGCCAAGCTGAGCGCTGACCTGTCCGATGATCCGGCCCGCG
CCCTGGTCGAGGATCTTGGCGCTGCACCGCTTGAGTTGAATGCTCCTGCGGCGGCCGGGTCCCCTGCAGGTGCCACGGCT
GGAACCCGATCTTCCTCGCGCAGCACAGCTCCTGCGGCCACCGACGGCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(25-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

64.955

79.567

0.517
  recA Acinetobacter baumannii D1279779

64.286

77.404

0.498
  recA Glaesserella parasuis strain SC1401

59.026

83.894

0.495
  recA Pseudomonas stutzeri DSM 10701

63.354

77.404

0.49
  recA Neisseria gonorrhoeae MS11

58.551

82.933

0.486
  recA Neisseria gonorrhoeae MS11

58.551

82.933

0.486
  recA Neisseria gonorrhoeae strain FA1090

58.551

82.933

0.486
  recA Ralstonia pseudosolanacearum GMI1000

64.63

74.76

0.483
  recA Bacillus subtilis subsp. subtilis str. 168

63.666

74.76

0.476
  recA Vibrio cholerae strain A1552

61.491

77.404

0.476
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.491

77.404

0.476
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.271

79.087

0.469
  recA Helicobacter pylori 26695

57.101

81.25

0.464
  recA Helicobacter pylori strain NCTC11637

57.101

81.25

0.464
  recA Latilactobacillus sakei subsp. sakei 23K

59.688

76.923

0.459
  recA Lactococcus lactis subsp. cremoris KW2

56.047

81.49

0.457
  recA Streptococcus pneumoniae R6

55.588

81.731

0.454
  recA Streptococcus pneumoniae TIGR4

55.588

81.731

0.454
  recA Streptococcus pneumoniae D39

55.588

81.731

0.454
  recA Streptococcus pneumoniae Rx1

55.588

81.731

0.454
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.383

75.24

0.454
  recA Streptococcus mitis NCTC 12261

55.457

81.49

0.452
  recA Streptococcus mitis SK321

55.621

81.25

0.452
  recA Streptococcus pyogenes NZ131

52.235

86.058

0.45
  recA Streptococcus mutans UA159

55.522

80.529

0.447
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.176

76.442

0.445