Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   JS608_RS10820 Genome accession   NZ_CP071042
Coordinates   2148783..2149214 (+) Length   143 a.a.
NCBI ID   WP_003154113.1    Uniprot ID   A7Z4X3
Organism   Bacillus amyloliquefaciens isolate ELA1901024     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 2143783..2154214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JS608_RS10800 (JS608_02153) spoVS 2144352..2144612 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  JS608_RS10805 (JS608_02154) tdh 2144871..2145917 (+) 1047 WP_063174829.1 L-threonine 3-dehydrogenase -
  JS608_RS10810 (JS608_02155) - 2145930..2147108 (+) 1179 WP_088037143.1 glycine C-acetyltransferase -
  JS608_RS10815 (JS608_02156) miaB 2147251..2148780 (+) 1530 WP_003154116.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  JS608_RS10820 (JS608_02157) ymcA 2148783..2149214 (+) 432 WP_003154113.1 RicAFT regulatory complex protein RicA family protein Regulator
  JS608_RS10825 (JS608_02158) cotE 2149469..2150014 (+) 546 WP_003154111.1 outer spore coat protein CotE -
  JS608_RS10830 (JS608_02159) hexA 2150133..2152718 (+) 2586 WP_003154108.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16082.22 Da        Isoelectric Point: 5.0213

>NTDB_id=475689 JS608_RS10820 WP_003154113.1 2148783..2149214(+) (ymcA) [Bacillus amyloliquefaciens isolate ELA1901024]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENEKVSAIINQIKTLQKQAVNLKHYEKLEALKQVESKIDALQE
ELEGIPIIQEFRDSQIEVNDLLQLVAHTISNQVTNEIITSTGGNLLTGETGSKVKHSNNSCSI

Nucleotide


Download         Length: 432 bp        

>NTDB_id=475689 JS608_RS10820 WP_003154113.1 2148783..2149214(+) (ymcA) [Bacillus amyloliquefaciens isolate ELA1901024]
ATGACGCTTTACTCAAAGAAAGACATTGTACAGCAGGCTAGGAACCTTGCGAAAATGATTTCTGAAACAGAAGAAGTTGA
TTTTTTCAAACGCGCCGAGGCGCAGATTAACGAAAATGAAAAAGTCTCTGCGATTATTAATCAGATTAAAACCCTGCAAA
AGCAAGCCGTTAACCTGAAGCACTACGAAAAGCTTGAAGCGCTGAAACAAGTGGAAAGTAAAATTGACGCCCTGCAGGAA
GAGCTTGAAGGGATTCCGATCATCCAGGAATTCAGAGATTCCCAGATTGAGGTCAATGACCTTCTTCAGCTTGTCGCACA
TACGATCTCAAATCAGGTGACAAACGAAATCATTACATCTACCGGAGGCAACCTGCTGACGGGAGAAACCGGTTCAAAAG
TAAAACATTCGAATAACAGCTGTTCTATTTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z4X3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

91.608

100

0.916