Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   JS608_RS08445 Genome accession   NZ_CP071042
Coordinates   1640993..1641664 (+) Length   223 a.a.
NCBI ID   WP_003154900.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens isolate ELA1901024     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1635993..1646664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JS608_RS08430 (JS608_01679) - 1636801..1637799 (+) 999 WP_003154904.1 LacI family DNA-binding transcriptional regulator -
  JS608_RS08435 - 1637873..1639306 (+) 1434 Protein_1611 tagaturonate reductase -
  JS608_RS08440 - 1639316..1640809 (+) 1494 WP_117614553.1 UxaA family hydrolase -
  JS608_RS08445 (JS608_01681) scnR 1640993..1641664 (+) 672 WP_003154900.1 response regulator transcription factor Regulator
  JS608_RS08450 (JS608_01682) - 1641661..1643019 (+) 1359 WP_003154898.1 HAMP domain-containing sensor histidine kinase -
  JS608_RS08455 (JS608_01683) - 1643139..1644074 (+) 936 WP_003154897.1 ABC transporter ATP-binding protein -
  JS608_RS08460 (JS608_01684) - 1644055..1644786 (+) 732 WP_060386887.1 ABC transporter permease -
  JS608_RS08465 (JS608_01685) - 1644804..1644995 (+) 192 WP_003154894.1 hypothetical protein -
  JS608_RS08470 (JS608_01686) - 1645061..1646311 (+) 1251 WP_063174235.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 26422.68 Da        Isoelectric Point: 6.5038

>NTDB_id=475667 JS608_RS08445 WP_003154900.1 1640993..1641664(+) (scnR) [Bacillus amyloliquefaciens isolate ELA1901024]
MNNILYIEDDQEIGQFVKDDLEDRGYMIIWLTSSYNYETYIEKADLIVLDIMMPGLDGFTIGQRMKKTHPQIPLLLLTAR
TGLEDKLKGLGFADDYVTKPFHPDELAARIEVLLRRFDKTAIHELKLKHLSVHLKEKRILNHQSHEEIFLTDKQLRIFLL
LLRHPNQILTKEQIYENIWEQPYIEGDKTLMVHIRHLRQKIEINPNEPEILETIRGIGYRIKQ

Nucleotide


Download         Length: 672 bp        

>NTDB_id=475667 JS608_RS08445 WP_003154900.1 1640993..1641664(+) (scnR) [Bacillus amyloliquefaciens isolate ELA1901024]
ATGAATAACATTTTATACATTGAAGATGACCAAGAAATTGGCCAATTTGTAAAGGATGATTTAGAAGATCGGGGCTATAT
GATTATATGGCTCACTTCTTCCTATAATTACGAAACATATATAGAAAAGGCTGATCTGATCGTGCTTGATATAATGATGC
CCGGTTTAGATGGATTTACAATCGGTCAAAGGATGAAAAAAACACATCCGCAGATCCCGCTCTTGCTTTTAACAGCGAGA
ACGGGTCTGGAAGATAAACTGAAAGGCTTAGGATTTGCGGATGATTACGTGACAAAACCCTTTCATCCCGATGAACTGGC
CGCTCGAATCGAAGTATTATTAAGAAGATTTGACAAGACTGCCATTCATGAATTGAAGCTAAAACACTTAAGTGTCCACT
TGAAAGAAAAAAGAATTTTAAATCATCAAAGTCATGAGGAAATATTTTTAACTGATAAGCAGTTAAGGATTTTTTTGCTT
TTGCTTAGACATCCCAATCAAATATTAACAAAGGAACAAATTTATGAAAATATTTGGGAGCAGCCTTATATCGAAGGGGA
TAAGACGTTGATGGTACATATCAGGCATTTACGGCAAAAAATCGAGATCAATCCAAATGAGCCGGAAATTCTTGAAACGA
TCAGAGGGATTGGATACAGGATTAAACAATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(146-221)

Response regulator receiver domain (Response_reg)

(4-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

36

100

0.363