Detailed information NTG0475641

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: JS608_RS04290
• Genome accession: NZ_CP071042
• Coordinates: 875864..876994 (+)
• Length: 376 a.a.
• NCBI ID: WP_079005224.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens isolate ELA1901024
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 870864..881994

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JS608_RS04265 (JS608_00850)	-	871107..871552 (+)	446	Protein_807	NUDIX hydrolase	-
JS608_RS04270 (JS608_00851)	-	871610..873331 (+)	1722	WP_024084902.1	pyruvate oxidase	-
JS608_RS04275 (JS608_00852)	-	873635..874099 (+)	465	Protein_809	peptidoglycan-binding protein	-
JS608_RS04280 (JS608_00853)	-	874135..874692 (-)	558	WP_079005223.1	hypothetical protein	-
JS608_RS04285 (JS608_00854)	-	874756..875205 (-)	450	WP_025649977.1	hypothetical protein	-
JS608_RS04290 (JS608_00855)	rapC	875864..876994 (+)	1131	WP_079005224.1	RapH N-terminal domain-containing protein	Regulator
JS608_RS20470 (JS608_00856)	-	876994..877128 (+)	135	WP_254922222.1	hypothetical protein	-
JS608_RS04295 (JS608_00857)	-	877489..877719 (-)	231	WP_014304381.1	hypothetical protein	-
JS608_RS04300 (JS608_00859)	-	878099..878656 (-)	558	WP_041481822.1	hypothetical protein	-
JS608_RS04305 (JS608_00860)	-	878752..879387 (-)	636	WP_225630094.1	hypothetical protein	-
JS608_RS04310 (JS608_00861)	-	879549..879815 (-)	267	WP_003156241.1	hypothetical protein	-
JS608_RS04315 (JS608_00862)	-	879921..881198 (-)	1278	WP_088037511.1	Nramp family divalent metal transporter	-

Sequence

Protein

• Length: 376 a.a.
• Molecular weight: 44699.96 Da
• Isoelectric Point: 5.2969

>NTDB_id=475641 JS608_RS04290 WP_079005224.1 875864..876994(+) (rapC) [Bacillus amyloliquefaciens isolate ELA1901024]
MDQVLPSSQVGVKINEWYKMIRQFSVPDAEILKAEVEQEIEEMEEDQDLLVFYSLMCFRHQLMLDSLEPEDRYRDRPTVD
ELLEKIEKPQKRLTGLLKYYSLFFRGMYEFDHKEYVDAISYYRKAERELNAVSDEMEQAEFHYKIADAYYQIDQHFVSLN
HLKKAKQLFEKNQLYKVKVIGCNMMVGANMYDMYRLTEAESYYREALSNARGLDEEKVKRIIGVIFHNSGLVYLRGKNLI
AAEENFKKAIDVKEHIDTVYGVRSLYMMANVLYQCDKAKEARFFYETALNRARTSNEEEYLAKLKIINSLYEEYNETEVK
QSLGYLEEKRLWSDFAELTEKLGDFHFEKRNYAEGRNFLKKTIHAQTQILKVTEAI

Nucleotide

• Length: 1131 bp

>NTDB_id=475641 JS608_RS04290 WP_079005224.1 875864..876994(+) (rapC) [Bacillus amyloliquefaciens isolate ELA1901024]
ATGGATCAAGTTTTACCGTCGTCCCAAGTTGGTGTCAAGATCAATGAATGGTACAAAATGATTCGCCAGTTCAGTGTGCC
TGATGCTGAGATTTTAAAGGCTGAGGTCGAACAGGAAATAGAGGAGATGGAAGAGGATCAGGATTTGCTTGTTTTTTATT
CATTGATGTGCTTTCGTCACCAATTGATGTTAGATTCCTTGGAGCCGGAAGACAGATATCGAGATCGCCCCACAGTCGAC
GAACTACTTGAAAAAATAGAAAAGCCGCAAAAAAGACTTACAGGCCTCTTGAAGTATTACTCATTATTTTTTCGTGGAAT
GTATGAATTTGATCATAAAGAGTATGTTGATGCGATAAGCTATTATCGCAAAGCAGAGAGAGAGTTGAATGCTGTATCAG
ATGAAATGGAGCAAGCTGAATTTCATTACAAAATAGCTGATGCCTATTATCAAATTGATCAGCACTTTGTTTCCCTCAAT
CATTTAAAAAAAGCCAAGCAATTGTTTGAAAAAAATCAATTATACAAAGTGAAAGTGATTGGCTGTAATATGATGGTCGG
TGCTAACATGTACGATATGTACAGGCTGACGGAGGCAGAATCATATTATCGGGAAGCATTAAGTAACGCCCGTGGCTTGG
ATGAGGAAAAAGTGAAAAGAATTATCGGAGTGATCTTTCATAACTCAGGCTTAGTTTATTTAAGAGGGAAAAATTTGATT
GCTGCTGAAGAGAATTTCAAAAAGGCAATAGACGTGAAAGAACATATTGATACAGTGTATGGAGTGAGATCATTATATAT
GATGGCGAATGTCCTGTACCAATGTGATAAAGCCAAGGAAGCACGTTTCTTTTATGAAACGGCTTTAAATCGTGCTCGGA
CTTCTAATGAAGAGGAATATTTGGCTAAATTAAAAATCATTAATTCATTGTACGAAGAATATAATGAAACAGAAGTGAAA
CAAAGCTTAGGTTACTTGGAAGAGAAACGCCTTTGGTCTGATTTCGCAGAGCTAACCGAAAAATTAGGTGACTTTCATTT
TGAGAAGAGAAACTATGCAGAGGGAAGAAACTTTTTAAAGAAAACCATACATGCCCAAACACAAATACTTAAGGTTACGG
AGGCTATATAA

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

• Tetratricopeptide repeat (TPR_8) (263-293)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	37.265	99.202	0.37