Detailed information NTG0475628

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: JS608_RS03535
• Genome accession: NZ_CP071042
• Coordinates: 703898..705019 (+)
• Length: 373 a.a.
• NCBI ID: WP_003156660.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens isolate ELA1901024
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 698898..710019

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JS608_RS03515 (JS608_00704)	-	699205..700200 (-)	996	WP_014304282.1	DUF5105 domain-containing protein	-
JS608_RS03520 (JS608_00705)	-	700329..701729 (+)	1401	WP_003156664.1	YcdB/YcdC domain-containing protein	-
JS608_RS03525 (JS608_00706)	-	701930..703288 (+)	1359	WP_003156662.1	YcdB/YcdC domain-containing protein	-
JS608_RS03530 (JS608_00707)	-	703285..703788 (-)	504	WP_003156661.1	M15 family metallopeptidase	-
JS608_RS03535 (JS608_00708)	rapF	703898..705019 (+)	1122	WP_003156660.1	tetratricopeptide repeat protein	Regulator
JS608_RS03540 (JS608_00709)	-	705135..705914 (+)	780	WP_015388737.1	glucose 1-dehydrogenase	-
JS608_RS03545 (JS608_00710)	-	705997..707676 (+)	1680	Protein_664	alpha-glucosidase	-
JS608_RS03550 (JS608_00711)	-	707861..708820 (+)	960	WP_071392600.1	metal ABC transporter substrate-binding protein	-
JS608_RS03555 (JS608_00712)	-	708875..709570 (+)	696	WP_003156655.1	metal ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 373 a.a.
• Molecular weight: 44333.58 Da
• Isoelectric Point: 5.1691

>NTDB_id=475628 JS608_RS03535 WP_003156660.1 703898..705019(+) (rapF) [Bacillus amyloliquefaciens isolate ELA1901024]
MKSKIPSEEVAVKMNEWYKLIRAFEADKAEALKREIQYELEDMEENQDLLLYFSLMEFRHRIMLDKLKPMKDGDCQPPFS
EMLTEIEMNQQKLTGLLEYYFYYFRGMYEFKQKNFISAISHYKRAEEKLEYVEDDIEKAEFLYKISEVYYHIKQTFFSMN
YAGQALDIYKKYELYGMRRVQCKFIIAGNLMDAQQHKKALEYLECALEHAERLDDQYMIAAAYYNIGHCMYSLGDFCKAA
EDFERAAAGFEAHSFRQVIQAVFSLTHIYFKTEKYSEAAASCARGMRSAAEWEDEIYMTKFRLIKELYQGEGGQDSLKEY
FDILESKELLADTEELLQDAAHFFHKRENYKAASYFFSRLVGVQKRLQMNNYA

Nucleotide

• Length: 1122 bp

>NTDB_id=475628 JS608_RS03535 WP_003156660.1 703898..705019(+) (rapF) [Bacillus amyloliquefaciens isolate ELA1901024]
ATGAAATCCAAGATTCCATCTGAAGAAGTGGCCGTAAAGATGAATGAATGGTATAAGCTGATCCGCGCGTTTGAAGCCGA
TAAAGCTGAAGCGCTGAAGCGGGAGATTCAATATGAACTCGAAGATATGGAAGAAAATCAGGATTTATTGTTGTATTTTT
CATTGATGGAATTTAGGCACCGCATCATGCTGGATAAATTAAAACCCATGAAAGACGGCGACTGCCAGCCTCCGTTCTCT
GAAATGCTCACTGAGATTGAGATGAACCAGCAAAAGCTGACCGGCTTACTGGAATATTATTTTTACTATTTCAGAGGAAT
GTATGAATTTAAGCAGAAAAACTTCATCTCAGCGATTTCTCATTATAAGCGGGCTGAGGAAAAGCTTGAATATGTGGAAG
ATGACATAGAGAAAGCCGAGTTTCTGTATAAAATTTCTGAGGTGTACTATCATATCAAGCAGACTTTCTTTTCGATGAAT
TACGCGGGGCAGGCGCTTGATATTTACAAGAAATATGAATTATACGGAATGAGAAGGGTGCAGTGCAAATTTATCATTGC
CGGAAATCTGATGGACGCCCAGCAGCATAAAAAAGCGCTGGAATACCTCGAATGCGCCTTGGAGCACGCGGAGCGGCTTG
ATGATCAATATATGATTGCTGCGGCCTATTATAATATCGGGCACTGTATGTACAGTCTGGGTGACTTTTGCAAGGCGGCG
GAGGATTTTGAACGGGCGGCTGCCGGATTTGAAGCACACAGCTTCCGGCAGGTCATCCAGGCTGTTTTTTCACTCACGCA
TATCTACTTTAAAACGGAAAAATACAGTGAAGCCGCCGCCAGCTGCGCGCGGGGCATGAGAAGCGCGGCGGAGTGGGAAG
ATGAGATCTATATGACGAAATTCCGTCTGATTAAAGAGCTTTATCAGGGGGAAGGCGGACAGGATTCGCTCAAAGAGTAT
TTTGACATCCTGGAATCAAAGGAGCTGTTGGCTGACACAGAGGAACTGCTTCAGGACGCGGCTCATTTCTTTCATAAACG
GGAGAACTACAAAGCGGCATCTTATTTTTTCAGCAGGCTTGTCGGCGTGCAAAAAAGGCTGCAAATGAACAACTACGCAT
AA

Domains

Predicted by InterProScan.

• Tetratricopeptide repeat (TPR_12) (187-251)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	42.588	99.464	0.424
rapC	Bacillus subtilis subsp. subtilis str. 168	40.323	99.732	0.402