Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   PSBA01_RS11300 Genome accession   NZ_CP060390
Coordinates   2638884..2639795 (+) Length   303 a.a.
NCBI ID   WP_228724683.1    Uniprot ID   -
Organism   Psychrobacter sp. KCTC 72983     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2633884..2644795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSBA01_RS11280 - 2634046..2634639 (+) 594 WP_186474394.1 hypothetical protein -
  PSBA01_RS11285 - 2634772..2636214 (-) 1443 WP_228724576.1 M16 family metallopeptidase -
  PSBA01_RS11290 - 2636415..2637914 (-) 1500 WP_186474397.1 M16 family metallopeptidase -
  PSBA01_RS11295 - 2637979..2638131 (-) 153 WP_186474399.1 hypothetical protein -
  PSBA01_RS11300 pilA 2638884..2639795 (+) 912 WP_228724683.1 signal recognition particle-docking protein FtsY Machinery gene
  PSBA01_RS11305 - 2639851..2640423 (+) 573 WP_186474401.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  PSBA01_RS11310 - 2640538..2641287 (-) 750 WP_058024057.1 YebC/PmpR family DNA-binding transcriptional regulator -
  PSBA01_RS11315 - 2641606..2642436 (+) 831 WP_093070013.1 ion transporter -
  PSBA01_RS11320 - 2642473..2643774 (-) 1302 WP_186474402.1 ABC1 kinase family protein -
  PSBA01_RS11325 aroQ 2643914..2644453 (-) 540 WP_186474403.1 type II 3-dehydroquinate dehydratase -

Sequence

Protein


Download         Length: 303 a.a.        Molecular weight: 32579.49 Da        Isoelectric Point: 5.4497

>NTDB_id=475625 PSBA01_RS11300 WP_228724683.1 2638884..2639795(+) (pilA) [Psychrobacter sp. KCTC 72983]
MKTGLSKSRKNLAEGMVSILIGGKEIDDELLEEVEDQLLVADIGVNATNRIIKNLTEQTARGDLIYAHSLYKALQSELVD
ILTPKVEPLVIDTSKKPFVILVVGVNGVGKTTTIGKLAKRLQGEGKSVMLAAGDTFRAAATEQLQIWGERNHIPVVAQGH
GSDSASVIFDAMQSAKAKNIDVLIADTAGRLQNKTHLMAELEKVVRVMRKADPSAPHEGMIVLDAGTGQNAINQVELFNK
IVPLTGITITKLDGTAKGGVVFNIAETTDVPIRYIGVGESIDDLRAFSPKQFVAALFETDDKE

Nucleotide


Download         Length: 912 bp        

>NTDB_id=475625 PSBA01_RS11300 WP_228724683.1 2638884..2639795(+) (pilA) [Psychrobacter sp. KCTC 72983]
ATGAAGACGGGGCTGAGTAAGTCACGTAAAAATTTGGCCGAAGGGATGGTCAGCATACTTATCGGTGGTAAAGAAATCGA
TGACGAGCTGTTAGAAGAGGTCGAAGATCAGTTACTGGTTGCTGATATCGGTGTTAATGCGACCAACCGTATCATCAAGA
ACCTGACCGAGCAGACTGCTCGTGGTGACTTGATTTATGCCCATTCATTATATAAAGCCTTGCAAAGTGAGCTGGTCGAT
ATCTTAACGCCAAAAGTTGAGCCGCTGGTGATTGATACCAGCAAAAAACCATTTGTTATCTTGGTCGTGGGTGTCAATGG
TGTGGGCAAAACCACAACCATCGGTAAGCTTGCCAAGCGCTTACAAGGTGAGGGTAAATCAGTCATGCTAGCGGCAGGGG
ATACTTTTCGCGCGGCTGCCACCGAGCAGCTACAGATTTGGGGCGAGCGTAATCATATCCCAGTGGTAGCACAAGGTCAT
GGCTCTGATAGTGCTTCTGTCATTTTTGATGCGATGCAATCTGCCAAAGCAAAAAATATCGACGTACTCATAGCAGATAC
CGCTGGCCGTCTACAAAACAAGACGCATTTGATGGCAGAGTTAGAGAAAGTGGTGCGCGTGATGCGTAAAGCTGATCCAA
GCGCTCCGCATGAAGGTATGATCGTACTCGATGCTGGCACGGGTCAAAATGCCATTAACCAAGTTGAGCTATTTAACAAG
ATTGTACCATTGACAGGTATCACCATTACGAAGCTAGATGGTACGGCAAAAGGTGGCGTGGTGTTTAACATTGCCGAAAC
GACAGACGTGCCTATCCGCTATATTGGTGTGGGTGAGTCGATTGATGACTTGCGCGCCTTTAGTCCGAAACAGTTTGTCG
CCGCTTTGTTTGAGACAGATGACAAAGAATAA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(97-297)

SRP54-type protein, helical bundle domain (SRP54_N)

(18-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

52.013

98.35

0.512