Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   H7696_RS09935 Genome accession   NZ_CP060386
Coordinates   2064288..2065709 (+) Length   473 a.a.
NCBI ID   WP_047100708.1    Uniprot ID   A0AAW6ZTF8
Organism   Vibrio alginolyticus strain Vb1833     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2059288..2070709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7696_RS09915 (H7696_09915) - 2059769..2060575 (-) 807 WP_054576446.1 adenosylcobinamide-GDP ribazoletransferase -
  H7696_RS09920 (H7696_09920) cobT 2060575..2061618 (-) 1044 WP_005377883.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  H7696_RS09925 (H7696_09925) - 2061867..2062556 (+) 690 WP_005377884.1 NAD(P)H-binding protein -
  H7696_RS09930 (H7696_09930) - 2062757..2064130 (+) 1374 WP_005377885.1 L-cystine transporter -
  H7696_RS09935 (H7696_09935) sbcB 2064288..2065709 (+) 1422 WP_047100708.1 exodeoxyribonuclease I Machinery gene
  H7696_RS09940 (H7696_09940) - 2065765..2066139 (+) 375 WP_005397786.1 CidA/LrgA family protein -
  H7696_RS09945 (H7696_09945) - 2066141..2066818 (+) 678 WP_005377888.1 LrgB family protein -
  H7696_RS09950 (H7696_09950) cdd 2067249..2068136 (+) 888 WP_005377892.1 cytidine deaminase -
  H7696_RS09955 (H7696_09955) purT 2068280..2069455 (+) 1176 WP_054866055.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  H7696_RS09960 (H7696_09960) - 2069528..2070178 (-) 651 WP_021707633.1 thiopurine S-methyltransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54377.57 Da        Isoelectric Point: 4.8138

>NTDB_id=475578 H7696_RS09935 WP_047100708.1 2064288..2065709(+) (sbcB) [Vibrio alginolyticus strain Vb1833]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQPPADYLPSPEAALITGITPQKTVQEGLSEP
EFIAKIHAELARPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRQKRKLNDLVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELHERLYTKREDLGELLPVPVKLVHLNKCPILAPAKTLTAENAES
IGIDRQQCLANLALLRQHPEIREKLISLFSVERKFDKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPGTLDEQEQRRWALHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYCYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=475578 H7696_RS09935 WP_047100708.1 2064288..2065709(+) (sbcB) [Vibrio alginolyticus strain Vb1833]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGATTATGAGACATGGGGAACCAACCCCGCGAAAGATCGCCCAAG
CCAGTTTGCTGGTGTTCGTACAGATGAAAACTTTAATATCATCGGCGAGCCTTTAGTCATGTACTGCCAGCCACCTGCTG
ATTATCTTCCGTCTCCTGAAGCTGCGCTTATTACTGGTATTACTCCGCAAAAAACGGTTCAAGAAGGCCTTTCTGAGCCA
GAGTTTATCGCTAAGATTCACGCTGAACTCGCGAGACCAAATACCACCAGTTTAGGCTACAACAGCATTCGCTTTGATGA
CGAAGTGACCCGTTATACTTGTTATCGCAACTTTATCGATCCATACGCATGGAGTTGGCAAAACGGTAACTCGCGTTGGG
ATTTACTCGATGTACTACGCGCGTGCCATGCCCTTCGCCCAGAAGGCGTAGAATGGCCAGAAAACGAAGATGGCTTCACT
AGCTTTAAATTAGAACACTTGTCTGTGGCTAACGGCATAGAACATAGTAACGCGCACGATGCCATGGCAGATGTGATTGC
GACTATCGAAATGGCAAAGAAAGTAAAAGCAGCGCAACCAAAATTGTTTGATTACTTTTTTTCTATGCGCCAAAAGCGCA
AGCTCAATGATTTAGTCGACATCGTCAACATGACACCGTTGATGCACGTTTCAGGCATGTTAGGGCGCGAATGCCAGTAC
ACTAGCTGGATTGTGCCTGTTGCTTGGCATCCAACCAATAATAATGCCGTTATCACCATCGATTTAGCGAAAGACCCTCA
ACCTATTCTTGAGCTATCCGCAGAAGAGCTGCACGAAAGACTCTACACTAAGCGCGAAGATCTTGGTGAATTGCTACCAG
TGCCAGTTAAACTAGTTCATTTGAACAAATGCCCTATTCTCGCCCCTGCAAAAACGTTAACGGCTGAAAATGCAGAGTCT
ATTGGCATTGATCGCCAGCAATGTCTCGCTAATCTCGCTTTGTTGCGCCAACATCCTGAAATTAGAGAAAAGCTGATTAG
CCTCTTTTCAGTCGAGCGTAAATTCGATAAAAGTGATGACGTCGATACACAGCTTTACGACGGGTTCTTTTCTCCGGCTG
ATCGCGCAGCTATGGATATCATTCGAGAAACCGACCCGAATAATCTTGCTGCATTAGACATTGAATTTGATGACAAGCGT
ATTAAACCTCTATTGTTCCGCTATCGTGCGCGTAACTTCCCAGGCACATTAGACGAGCAAGAACAAAGACGCTGGGCACT
ACACTGTCGAGAAGTGTTTGAAAGCCAAATTGAAGAGTACATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATTGCGATATTAAAATCCGTGTACTGTTATGTAGAGAGCTTAGCTTCCTAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-190)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.704

100

0.797