Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   H7696_RS02925 Genome accession   NZ_CP060386
Coordinates   609680..610198 (+) Length   172 a.a.
NCBI ID   WP_005379945.1    Uniprot ID   A0AAW7A9V7
Organism   Vibrio alginolyticus strain Vb1833     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 604680..615198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7696_RS02915 (H7696_02915) gshA 607398..608966 (+) 1569 WP_151515110.1 glutamate--cysteine ligase -
  H7696_RS02920 (H7696_02920) - 608990..609595 (+) 606 WP_186584664.1 hypothetical protein -
  H7696_RS02925 (H7696_02925) luxS 609680..610198 (+) 519 WP_005379945.1 S-ribosylhomocysteine lyase Regulator
  H7696_RS02930 (H7696_02930) - 610269..611549 (-) 1281 WP_005379948.1 HlyC/CorC family transporter -
  H7696_RS02935 (H7696_02935) - 611674..612468 (-) 795 WP_005379950.1 inner membrane protein YpjD -
  H7696_RS02940 (H7696_02940) ffh 612693..614075 (+) 1383 WP_005385423.1 signal recognition particle protein -
  H7696_RS02945 (H7696_02945) rpsP 614285..614533 (+) 249 WP_005379962.1 30S ribosomal protein S16 -
  H7696_RS02950 (H7696_02950) rimM 614563..615111 (+) 549 WP_005379964.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19132.87 Da        Isoelectric Point: 4.7221

>NTDB_id=475569 H7696_RS02925 WP_005379945.1 609680..610198(+) (luxS) [Vibrio alginolyticus strain Vb1833]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNDDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKVESQNKIPELNEYQCGTAAMHSLKEAQQIAKNILDAGVSVNKNDELA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=475569 H7696_RS02925 WP_005379945.1 609680..610198(+) (luxS) [Vibrio alginolyticus strain Vb1833]
ATGCCTTTACTCGATAGTTTTACCGTGGACCACACTCGTATGAATGCACCCGCTGTACGAGTGGCGAAAACCATGCAGAC
CCCAAAAGGGGATACGATTACTGTTTTCGACTTACGCTTTACTGCGCCAAACAAAGACATTCTTTCTGAAAAAGGTATTC
ACACCCTAGAGCACCTTTATGCAGGCTTTATGCGTAATCACCTAAACGATGATTCTGTTGAGATCATCGATATTTCGCCT
ATGGGTTGCCGCACAGGTTTTTACATGAGCCTGATTGGCACACCATCAGAGCAGCAAGTCGCAGATGCTTGGATTGCAGC
AATGGAAGATGTGCTGAAGGTAGAAAGTCAGAATAAGATCCCTGAACTTAACGAATACCAATGCGGCACGGCAGCAATGC
ACTCTTTAAAAGAAGCACAACAGATCGCAAAGAACATTTTGGATGCTGGTGTTTCGGTGAACAAAAATGATGAACTTGCT
TTGCCTGAGTCGATGTTAAAAGAGTTGCGCATCGACTAG

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

86.55

99.419

0.86