Detailed information NTG0475566

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: H7696_RS02795
• Genome accession: NZ_CP060386
• Coordinates: 587045..588031 (+)
• Length: 328 a.a.
• NCBI ID: WP_005380887.1
• Uniprot ID: A0A2I3CB39
• Organism: Vibrio alginolyticus strain Vb1833
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 582045..593031

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H7696_RS02760 (H7696_02760)	ftsB	582055..582336 (+)	282	WP_005380907.1	cell division protein FtsB	-
H7696_RS02765 (H7696_02765)	ispD	582338..583045 (+)	708	WP_054701898.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
H7696_RS02770 (H7696_02770)	ispF	583060..583536 (+)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
H7696_RS02775 (H7696_02775)	truD	583582..584625 (+)	1044	WP_033907437.1	tRNA pseudouridine(13) synthase TruD	-
H7696_RS02780 (H7696_02780)	surE	584625..585401 (+)	777	WP_005380894.1	5'/3'-nucleotidase SurE	-
H7696_RS02785 (H7696_02785)	-	585401..586027 (+)	627	WP_005380892.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
H7696_RS02790 (H7696_02790)	-	586041..586964 (+)	924	WP_017633546.1	peptidoglycan DD-metalloendopeptidase family protein	-
H7696_RS02795 (H7696_02795)	rpoS	587045..588031 (+)	987	WP_005380887.1	RNA polymerase sigma factor RpoS	Regulator
H7696_RS02800 (H7696_02800)	mutS	588114..590675 (-)	2562	WP_064354301.1	DNA mismatch repair protein MutS	-
H7696_RS02805 (H7696_02805)	pncC	590760..591242 (+)	483	WP_017633544.1	nicotinamide-nucleotide amidase	-
H7696_RS02810 (H7696_02810)	recA	591443..592486 (+)	1044	WP_005380874.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37412.31 Da
• Isoelectric Point: 4.7299

>NTDB_id=475566 H7696_RS02795 WP_005380887.1 587045..588031(+) (rpoS) [Vibrio alginolyticus strain Vb1833]
MSISNTVTKVEEFAFDNASVKTIDNELERSSSTESKATAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREVLIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=475566 H7696_RS02795 WP_005380887.1 587045..588031(+) (rpoS) [Vibrio alginolyticus strain Vb1833]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTTGCATTTGACAATGCGTCAGTGAAGACCATTGATAACGAACT
CGAAAGATCATCATCCACAGAAAGCAAAGCGACTGCGCGTGAAGAATTTGACGCGAGCAGTAAAAGCTTAGATGCAACTC
AGTTGTATTTGGGCGAAATTGGCTTCTCACCTTTACTTACTGCCGAAGAAGAAGTGCTTTACGCAAGACGCGCCCTACGT
GGCGACGAAGCGGCACGCAAACGTATGATCGAAAGTAACCTACGTTTGGTTGTTAAGATTTCTCGTCGATACAGTAACCG
TGGTCTAGCACTACTCGATCTGATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTCGAAAAATTCGACCCAGAACGTG
GTTTCCGTTTCTCTACTTACGCAACGTGGTGGATCCGACAAACGATAGAGCGAGCGTTGATGAACCAAACTCGCACGATC
CGTCTACCTATCCACGTAGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCACGA
ACCGACCGCAGAAGAAATTGCTGCTCAATTAGATATTCCAGTCGAAGACGTAAGCAAAATGTTACGCCTTAATGAGCGTA
TTAGCTCTGTCGACACGCCAATCGGTGGTGACGGTGAGAAAGCGCTGCTGGATATTATTCCTGATGCAAACAACTCTGAT
CCAGAAGTTTCGACTCAAGATGACGACATCAAATCATCGTTGATTCATTGGTTAGAAGAGTTGAATCCGAAACAGAAAGA
AGTGCTTGCACGTCGCTTCGGCCTACTAGGCTACGAGCCTTCGACGCTGGAAGAAGTTGGTCGAGAGATTGGCCTGACAC
GTGAGCGAGTACGTCAAATACAAGTGGAAGGTTTGCGTCGTCTTCGTGAAGTCCTAATCAAACAAGGTTTGAATATGGAA
AACTTGTTTAACGTAGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

3D structure

• AlphaFold DB: A0A2I3CB39

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.854