Detailed information NTG0475530

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: H7F36_RS01375
• Genome accession: NZ_CP060296
• Coordinates: 279023..280213 (+)
• Length: 396 a.a.
• NCBI ID: WP_187052996.1
• Uniprot ID: A0A7G8W0Q5
• Organism: Variovorax sp. PAMC28562
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 274023..285213

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H7F36_RS01350 (H7F36_01350)	pxpB	274297..274962 (-)	666	WP_261802460.1	5-oxoprolinase subunit PxpB	-
H7F36_RS01355 (H7F36_01355)	coaD	274963..275466 (-)	504	WP_187052993.1	pantetheine-phosphate adenylyltransferase	-
H7F36_RS01360 (H7F36_01360)	-	275506..276165 (-)	660	WP_187052994.1	RsmD family RNA methyltransferase	-
H7F36_RS01365 (H7F36_01365)	-	276162..277514 (-)	1353	WP_187052995.1	M16 family metallopeptidase	-
H7F36_RS01370 (H7F36_01370)	-	277529..278992 (-)	1464	WP_261802461.1	M16 family metallopeptidase	-
H7F36_RS01375 (H7F36_01375)	pilA	279023..280213 (+)	1191	WP_187052996.1	signal recognition particle-docking protein FtsY	Machinery gene
H7F36_RS01380 (H7F36_01380)	-	280234..280566 (-)	333	WP_187052997.1	FHA domain-containing protein	-
H7F36_RS01385 (H7F36_01385)	rpoH	280917..281861 (+)	945	WP_187052998.1	RNA polymerase sigma factor RpoH	-
H7F36_RS01390 (H7F36_01390)	-	281955..282578 (-)	624	WP_187052999.1	SCO family protein	-
H7F36_RS01395 (H7F36_01395)	cyoE	282592..283497 (-)	906	WP_187053000.1	heme o synthase	-
H7F36_RS01400 (H7F36_01400)	-	283494..284741 (-)	1248	WP_187053001.1	COX15/CtaA family protein	-

Sequence

Protein

• Length: 396 a.a.
• Molecular weight: 41358.97 Da
• Isoelectric Point: 7.3611

>NTDB_id=475530 H7F36_RS01375 WP_187052996.1 279023..280213(+) (pilA) [Variovorax sp. PAMC28562]
MFSFFKKKPAVESPAAPIAPPPLEKPAELPAQAAPARSVFAPSTWFKGETAVEVPVAPPPVAVPAPPSVVAPAPQPVVAP
TPVSALAATVAPPPAAASRAGWMDKLKSGLRKTGTSIAATFVNAQIDDALYEELESALLMADTGVKATEYLLEDLRRRVR
STMPSNAAQVKVLLADAIADLLKPLEKPMVIGQHTPTVIMVAGVNGAGKTTSIGKLTKHLANEGASVLLAAADTFRAAAR
EQLLVWADRNTVEIVSNAGGDPSAVSFDAVKAGKARGKDVVLVDTAGRLPTQLHLMDELKKIKRVVSKADATAPHEVLLV
IDGNTGQNALAQVRAFDEILGLTGLIVTKLDGTAKGGVLCAIARERPIPVYFIGVGEKLEDLETFDAREFAQALLG

Nucleotide

• Length: 1191 bp

>NTDB_id=475530 H7F36_RS01375 WP_187052996.1 279023..280213(+) (pilA) [Variovorax sp. PAMC28562]
ATGTTCAGTTTCTTCAAGAAAAAGCCTGCGGTCGAAAGTCCTGCGGCACCCATTGCCCCTCCCCCGCTGGAAAAGCCTGC
CGAATTGCCTGCTCAAGCAGCGCCGGCGCGCTCGGTTTTTGCACCCTCGACATGGTTCAAGGGCGAGACGGCGGTAGAAG
TTCCGGTGGCGCCGCCGCCGGTTGCCGTGCCCGCGCCGCCATCGGTGGTTGCGCCTGCGCCTCAGCCGGTGGTAGCGCCA
ACGCCCGTCTCCGCTTTAGCGGCAACGGTAGCGCCCCCCCCCGCTGCCGCCTCCCGCGCCGGATGGATGGACAAGCTCAA
GTCCGGCCTCCGCAAGACGGGCACCAGCATTGCCGCGACCTTCGTCAATGCGCAGATCGACGACGCCTTGTACGAGGAAC
TGGAGTCGGCACTTTTGATGGCCGACACCGGCGTCAAAGCCACCGAATATCTTCTGGAAGACTTGCGCCGCCGGGTGAGA
AGCACCATGCCAAGCAATGCAGCGCAAGTGAAAGTGCTGCTGGCCGACGCTATCGCCGACCTGCTGAAGCCACTCGAAAA
GCCGATGGTCATCGGGCAGCACACACCCACGGTGATCATGGTGGCGGGCGTCAATGGCGCCGGCAAGACGACGTCGATCG
GCAAGCTGACCAAGCACCTTGCCAACGAAGGCGCGTCCGTCTTGCTGGCTGCGGCGGATACCTTTCGGGCCGCGGCGCGC
GAACAATTGCTGGTATGGGCCGATCGCAACACGGTGGAGATCGTCAGCAACGCGGGCGGCGATCCGTCCGCCGTGAGCTT
CGATGCCGTCAAGGCGGGTAAGGCGCGGGGCAAGGACGTGGTGCTGGTCGATACCGCAGGCCGGTTGCCCACCCAACTGC
ACCTGATGGACGAGTTAAAAAAGATCAAACGCGTCGTGAGCAAGGCCGATGCGACGGCACCGCACGAGGTCTTGCTGGTG
ATCGACGGCAACACCGGCCAGAACGCACTGGCGCAGGTCAGGGCTTTCGACGAAATACTCGGTTTGACGGGCTTGATCGT
GACCAAGCTCGACGGCACGGCCAAGGGCGGCGTACTGTGCGCCATCGCGCGGGAACGGCCGATTCCGGTCTATTTCATCG
GTGTCGGCGAAAAGCTGGAAGACTTGGAAACGTTCGACGCCCGCGAATTCGCTCAGGCTTTGCTCGGTTAG

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (115-177)

• SRP54-type protein, GTPase domain (SRP54) (196-396)

3D structure

• AlphaFold DB: A0A7G8W0Q5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	48.804	100	0.515