Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   H7F35_RS07350 Genome accession   NZ_CP060295
Coordinates   1538436..1538834 (-) Length   132 a.a.
NCBI ID   WP_081271091.1    Uniprot ID   -
Organism   Variovorax sp. PAMC26660     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1538919..1548657 1538436..1538834 flank 85


Gene organization within MGE regions


Location: 1538436..1548657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7F35_RS07350 (H7F35_07350) pilG 1538436..1538834 (-) 399 WP_081271091.1 PleD family two-component system response regulator Regulator
  H7F35_RS07355 (H7F35_07355) - 1538919..1539089 (-) 171 WP_007838397.1 rubredoxin -
  H7F35_RS07360 (H7F35_07360) - 1539202..1540170 (+) 969 WP_187112267.1 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase -
  H7F35_RS07365 (H7F35_07365) hemL 1540531..1541817 (+) 1287 WP_187112268.1 glutamate-1-semialdehyde 2,1-aminomutase -
  H7F35_RS07370 (H7F35_07370) - 1542049..1542522 (+) 474 WP_187112269.1 hypothetical protein -
  H7F35_RS07375 (H7F35_07375) purH 1542640..1544247 (-) 1608 WP_187112270.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase -
  H7F35_RS07380 (H7F35_07380) - 1544264..1544500 (-) 237 WP_007838304.1 Fis family transcriptional regulator -
  H7F35_RS07385 (H7F35_07385) dusB 1544518..1545576 (-) 1059 WP_187112271.1 tRNA dihydrouridine synthase DusB -
  H7F35_RS07390 (H7F35_07390) - 1545751..1546221 (+) 471 WP_187112272.1 YqaA family protein -
  H7F35_RS07395 (H7F35_07395) - 1546232..1546906 (-) 675 WP_187112273.1 glutathione S-transferase -
  H7F35_RS35110 - 1547162..1547269 (+) 108 Protein_1469 serine protease -
  H7F35_RS07400 (H7F35_07400) - 1547357..1547785 (-) 429 WP_187112274.1 hypothetical protein -
  H7F35_RS07405 (H7F35_07405) - 1547803..1548657 (-) 855 WP_187112275.1 DUF4019 domain-containing protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14678.82 Da        Isoelectric Point: 7.3215

>NTDB_id=475517 H7F35_RS07350 WP_081271091.1 1538436..1538834(-) (pilG) [Variovorax sp. PAMC26660]
MGPNGSGYKVLVIDDSNTIRRSAEIFLKQGGHEVLLAEDGFDALSKVNDHKPHLIFCDILMPRLDGYQTCAIIKRNAHFS
NVPVVMLSSKDGVFDKARGRMVGSQDYLTKPFTKDQLLQAVQQFGIVQQEAQ

Nucleotide


Download         Length: 399 bp        

>NTDB_id=475517 H7F35_RS07350 WP_081271091.1 1538436..1538834(-) (pilG) [Variovorax sp. PAMC26660]
ATGGGCCCGAATGGATCAGGTTACAAGGTGCTCGTCATCGACGACAGCAACACCATCCGGCGCAGTGCCGAGATATTTCT
GAAGCAGGGTGGGCACGAGGTTCTTCTGGCGGAAGACGGATTCGACGCGCTCTCCAAGGTTAACGACCACAAGCCGCATC
TGATTTTCTGCGACATCCTGATGCCGCGTCTCGACGGCTACCAGACCTGCGCCATCATCAAGCGCAATGCCCACTTTTCC
AACGTTCCGGTCGTCATGCTGTCGTCGAAAGACGGTGTATTCGACAAGGCACGCGGCCGCATGGTCGGCTCCCAGGACTA
CCTGACCAAGCCTTTCACCAAAGACCAACTGCTGCAGGCCGTGCAGCAGTTTGGCATCGTTCAACAGGAAGCGCAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

62.281

86.364

0.538