Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   H7F31_RS05840 Genome accession   NZ_CP060293
Coordinates   1466654..1468021 (+) Length   455 a.a.
NCBI ID   WP_087570273.1    Uniprot ID   A0A1Y5K3Q9
Organism   Paenibacillus sp. PAMC21692     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1461654..1473021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7F31_RS05825 (H7F31_05825) - 1462520..1463509 (+) 990 WP_187103400.1 Gfo/Idh/MocA family protein -
  H7F31_RS05830 (H7F31_05830) - 1463506..1464486 (+) 981 WP_187103401.1 sugar phosphate isomerase/epimerase -
  H7F31_RS05835 (H7F31_05835) - 1464473..1466032 (+) 1560 WP_187103402.1 FAD-dependent oxidoreductase -
  H7F31_RS05840 (H7F31_05840) radA 1466654..1468021 (+) 1368 WP_087570273.1 DNA repair protein RadA Machinery gene
  H7F31_RS05845 (H7F31_05845) disA 1468037..1469113 (+) 1077 WP_187103403.1 DNA integrity scanning diadenylate cyclase DisA -
  H7F31_RS05850 (H7F31_05850) pssA 1469201..1469941 (+) 741 WP_087570275.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  H7F31_RS05855 (H7F31_05855) - 1470685..1472019 (+) 1335 WP_187103404.1 ABC transporter substrate-binding protein -
  H7F31_RS05860 (H7F31_05860) - 1472049..1472960 (+) 912 WP_187103405.1 carbohydrate ABC transporter permease -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49419.07 Da        Isoelectric Point: 7.0431

>NTDB_id=475499 H7F31_RS05840 WP_087570273.1 1466654..1468021(+) (radA) [Paenibacillus sp. PAMC21692]
MAKIKTKFVCTECGNESAKWLGKCPGCQAWNTMVEEKETVVKTKGIGLSGIHTKEKPQSIIHIESGQEPRIETRMVELNR
VLGGGVVPGSLILVGGDPGIGKSTLLLQTSHALAVKGLKVLYISGEESVRQTKLRADRLGALTETLYVLCETNMEHINDA
IESIDPDFLVIDSIQTVYEPRVESAPGSVSQVRECTAHFMRTAKIKGIATVLVGHVTKEGAIAGPRLLEHMVDCVLYFEG
ERHHTYRLLRAVKNRFGSTNEIGIFEMNEDGLREVSNPSELFLSERPLGVSGSTVVASMEGTRPVLVELQALVATTNFPS
PRRMSTGIDHHRMALIIAVLEKRNGMFLQTQDAYLNVAGGVKLDEPAVDLAAAVSLASSFRDAPTKPYDVIFGEVGLTGE
VRAVSRAEQRVKEAEKLGFKRVIMPEKSLKGWKAPDGIEIIGVNTVAEALKAALG

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=475499 H7F31_RS05840 WP_087570273.1 1466654..1468021(+) (radA) [Paenibacillus sp. PAMC21692]
ATGGCCAAAATAAAAACGAAATTCGTATGCACCGAATGCGGCAACGAGTCGGCAAAGTGGCTGGGCAAATGCCCGGGCTG
CCAAGCTTGGAACACGATGGTGGAAGAAAAGGAAACCGTCGTGAAGACGAAAGGCATCGGTTTATCGGGAATCCATACGA
AAGAAAAACCACAATCGATCATACACATAGAAAGTGGGCAAGAGCCGCGCATCGAAACCCGGATGGTGGAATTAAACCGT
GTGCTGGGAGGCGGCGTCGTGCCGGGCTCGCTCATATTGGTTGGCGGAGATCCGGGTATCGGCAAGTCTACGCTCTTGCT
GCAGACGTCGCATGCTTTGGCCGTCAAGGGACTGAAGGTGCTGTACATATCCGGGGAGGAATCCGTAAGGCAGACGAAGC
TGAGGGCGGATCGGCTCGGAGCGCTGACGGAAACATTATATGTGCTGTGCGAGACGAATATGGAGCATATTAATGATGCG
ATCGAATCCATAGATCCGGATTTCCTGGTTATCGACTCCATCCAGACGGTCTACGAACCGCGGGTCGAGTCGGCCCCGGG
CAGCGTGTCGCAGGTGAGGGAGTGCACGGCGCACTTCATGCGTACGGCGAAGATTAAAGGCATCGCGACCGTACTTGTCG
GCCACGTCACAAAGGAAGGCGCCATCGCCGGTCCTCGTCTGCTTGAGCACATGGTGGACTGCGTGCTGTACTTCGAGGGC
GAGCGGCATCATACATACCGGTTGTTGCGCGCGGTAAAGAACAGGTTCGGCTCCACGAACGAGATCGGAATCTTCGAGAT
GAACGAGGACGGCCTGCGCGAAGTATCCAATCCGTCGGAGCTGTTTCTGTCGGAACGGCCGCTCGGCGTATCGGGCTCGA
CGGTCGTGGCCAGCATGGAAGGCACGAGGCCTGTCCTGGTCGAGTTGCAGGCGCTTGTCGCGACGACGAATTTCCCGTCG
CCGAGGCGGATGTCGACAGGCATCGACCATCATCGGATGGCCCTAATCATCGCGGTGCTGGAAAAACGCAACGGGATGTT
TCTCCAGACGCAGGATGCCTATCTAAACGTTGCCGGCGGCGTAAAGCTCGACGAGCCTGCCGTCGATCTGGCCGCGGCAG
TCAGCCTGGCGTCCAGCTTCCGGGATGCGCCTACGAAGCCGTATGATGTTATTTTTGGAGAAGTGGGGCTGACGGGCGAG
GTCCGGGCGGTCTCCAGAGCGGAACAACGGGTAAAGGAAGCCGAGAAGCTCGGCTTCAAGCGGGTCATTATGCCGGAGAA
AAGTCTCAAGGGCTGGAAAGCGCCGGACGGAATCGAGATCATCGGCGTAAATACAGTAGCAGAAGCGTTAAAGGCAGCGC
TGGGATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(349-427)

AAA domain (AAA_25)

(70-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y5K3Q9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

66.521

100

0.668
  radA Streptococcus mitis NCTC 12261

58.628

99.341

0.582
  radA Streptococcus pneumoniae Rx1

58.628

99.341

0.582
  radA Streptococcus pneumoniae D39

58.628

99.341

0.582
  radA Streptococcus pneumoniae R6

58.628

99.341

0.582
  radA Streptococcus pneumoniae TIGR4

58.628

99.341

0.582
  radA Streptococcus mitis SK321

58.628

99.341

0.582