Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   JYA46_RS09980 Genome accession   NZ_CP070991
Coordinates   2002079..2002879 (-) Length   266 a.a.
NCBI ID   WP_098817949.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CBS2016-05     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1997079..2007879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYA46_RS09960 (JYA46_001992) - 1997939..1998058 (-) 120 Protein_1934 IS3 family transposase -
  JYA46_RS09965 (JYA46_001993) - 1998127..1998414 (+) 288 Protein_1935 DDE-type integrase/transposase/recombinase -
  JYA46_RS09970 (JYA46_001994) rlmH 1998686..1999165 (-) 480 WP_098817948.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  JYA46_RS09975 (JYA46_001995) adsA 1999534..2001852 (-) 2319 WP_210994167.1 LPXTG-anchored adenosine synthase AdsA -
  JYA46_RS09980 (JYA46_001996) vicX 2002079..2002879 (-) 801 WP_098817949.1 MBL fold metallo-hydrolase Regulator
  JYA46_RS09985 (JYA46_001997) yycI 2003268..2004056 (-) 789 WP_001104167.1 two-component system regulatory protein YycI -
  JYA46_RS09990 (JYA46_001998) yycH 2004057..2005391 (-) 1335 WP_072491102.1 two-component system activity regulator YycH -
  JYA46_RS09995 (JYA46_001999) walK 2005384..2007210 (-) 1827 WP_210994168.1 cell wall metabolism sensor histidine kinase WalK -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 30283.49 Da        Isoelectric Point: 6.3392

>NTDB_id=475498 JYA46_RS09980 WP_098817949.1 2002079..2002879(-) (vicX) [Staphylococcus aureus strain CBS2016-05]
MSRLIRMSVLASGSTGNATFVENEKGSLLVDVGLTGKKMEELFSQIDRNIQDLNGILVTHEHIDHIKGLGVLARKYQLPI
YANEKTWQAIEKKDSRIPMDQKFIFNPYETKSIAGFDVESFNVSHDAIDPQFYIFHNNYKKFTILTDTGYVSDRMKGMIR
GSDAFIFESNHDVDMLRMCRYPWKTKQRILGDMGHVSNEDAGHAMADVITGNTKRIYLSHLSQDNNMKDLARMSVGQVLN
EHDIDTEKEVLLCDTDKAIPTPIYTI

Nucleotide


Download         Length: 801 bp        

>NTDB_id=475498 JYA46_RS09980 WP_098817949.1 2002079..2002879(-) (vicX) [Staphylococcus aureus strain CBS2016-05]
ATGAGCCGCTTGATACGCATGAGTGTATTAGCAAGTGGTAGTACAGGTAACGCCACTTTTGTAGAAAATGAAAAAGGTAG
TCTATTAGTTGATGTTGGTTTGACTGGCAAGAAAATGGAAGAATTGTTTAGTCAAATTGACCGTAATATTCAAGATTTAA
ATGGTATTTTAGTAACCCATGAACATATTGATCATATTAAAGGATTAGGTGTTTTGGCGCGTAAATATCAATTGCCAATT
TATGCGAATGAAAAGACTTGGCAGGCAATTGAAAAGAAAGATAGTCGCATCCCTATGGATCAGAAATTCATTTTTAATCC
TTATGAAACAAAATCTATTGCAGGTTTCGATGTTGAATCGTTTAATGTGTCACATGATGCAATAGATCCGCAATTTTATA
TTTTCCATAATAACTATAAGAAGTTTACGATTTTGACAGATACGGGTTACGTGTCTGATCGTATGAAAGGTATGATACGT
GGCAGCGATGCGTTTATTTTTGAGAGTAATCATGACGTCGATATGTTGAGAATGTGTCGTTATCCATGGAAGACGAAACA
ACGTATTTTAGGCGATATGGGTCATGTATCTAATGAGGATGCGGGTCATGCGATGGCAGACGTGATTACAGGTAACACGA
AGCGTATTTACTTATCGCATTTATCACAAGATAATAACATGAAAGATTTGGCGCGTATGAGTGTTGGTCAAGTATTGAAC
GAACACGATATTGATACGGAAAAAGAAGTATTGCTATGTGATACGGATAAAGCTATTCCAACGCCAATATATACAATATA
A

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(14-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

49.027

96.617

0.474