Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   H7F24_RS12365 Genome accession   NZ_CP060290
Coordinates   2451962..2452240 (+) Length   92 a.a.
NCBI ID   WP_024424746.1    Uniprot ID   A0AAP7QQG0
Organism   Bacillus sp. PAMC22265     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2446962..2457240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7F24_RS12340 (H7F24_12340) - 2447059..2447334 (-) 276 WP_122631280.1 hypothetical protein -
  H7F24_RS12345 (H7F24_12345) - 2447478..2449097 (+) 1620 WP_024426884.1 ABC-F family ATP-binding cassette domain-containing protein -
  H7F24_RS12350 (H7F24_12350) - 2449132..2450364 (-) 1233 WP_024424744.1 aminopeptidase -
  H7F24_RS12355 (H7F24_12355) - 2450472..2450603 (-) 132 WP_003210922.1 protein YkpC -
  H7F24_RS12360 (H7F24_12360) mreBH 2450678..2451685 (-) 1008 WP_024424745.1 rod-share determining protein MreBH -
  H7F24_RS12365 (H7F24_12365) abrB 2451962..2452240 (+) 279 WP_024424746.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  H7F24_RS12370 (H7F24_12370) - 2452386..2453696 (+) 1311 WP_171464194.1 ATP-binding protein -
  H7F24_RS12375 (H7F24_12375) - 2453701..2454537 (+) 837 WP_171464195.1 gamma-glutamylcyclotransferase -
  H7F24_RS12380 (H7F24_12380) - 2454575..2455243 (+) 669 WP_008345123.1 potassium channel family protein -
  H7F24_RS12385 (H7F24_12385) ade 2455505..2457232 (+) 1728 WP_151039433.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10306.01 Da        Isoelectric Point: 4.6909

>NTDB_id=475459 H7F24_RS12365 WP_024424746.1 2451962..2452240(+) (abrB) [Bacillus sp. PAMC22265]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSMEFFIDGDKIVLKKYQPEGVCLMTGEITSENHEYGNGQITLSAEGAE
LLLKELQEALQK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=475459 H7F24_RS12365 WP_024424746.1 2451962..2452240(+) (abrB) [Bacillus sp. PAMC22265]
TTGAAATCTATCGGAGTCGTAAGAAAAGTAGACGAACTAGGGCGTATTGTGATGCCAATCGAATTGAGAAGAGCACTTGA
TATCGCTATTAAAGACAGTATGGAATTTTTTATAGATGGAGATAAAATCGTCTTGAAAAAATATCAGCCAGAGGGCGTTT
GTCTCATGACTGGTGAGATTACATCAGAGAACCATGAATATGGAAATGGTCAAATTACATTAAGCGCTGAAGGCGCAGAA
CTGCTGTTAAAAGAGCTGCAAGAAGCTCTTCAGAAGTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.945

98.913

0.543