Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   JYA46_RS03225 Genome accession   NZ_CP070991
Coordinates   580352..580978 (-) Length   208 a.a.
NCBI ID   WP_098817842.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CBS2016-05     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 575352..585978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYA46_RS03205 (JYA46_000641) - 575973..576659 (+) 687 WP_069993908.1 DnaD domain-containing protein -
  JYA46_RS03210 (JYA46_000642) nth 576649..577308 (+) 660 WP_000253765.1 endonuclease III -
  JYA46_RS03215 (JYA46_000643) - 577313..577654 (+) 342 WP_000182027.1 YpoC family protein -
  JYA46_RS03220 (JYA46_000644) - 578172..580355 (-) 2184 WP_210994260.1 transglycosylase domain-containing protein -
  JYA46_RS03225 (JYA46_000645) recU 580352..580978 (-) 627 WP_098817842.1 Holliday junction resolvase RecU Machinery gene
  JYA46_RS03230 (JYA46_000646) - 581284..581463 (+) 180 WP_098817841.1 hypothetical protein -
  JYA46_RS03235 (JYA46_000647) - 581518..581868 (+) 351 WP_001000802.1 YppE family protein -
  JYA46_RS03240 (JYA46_000648) - 581861..582424 (+) 564 WP_072491622.1 DUF1273 domain-containing protein -
  JYA46_RS03245 (JYA46_000649) gpsB 582438..582782 (+) 345 WP_001286320.1 cell division regulator GpsB -
  JYA46_RS03255 (JYA46_000651) - 583433..584578 (+) 1146 WP_098817840.1 class I SAM-dependent RNA methyltransferase -
  JYA46_RS03260 (JYA46_000652) - 584662..584994 (+) 333 WP_000516800.1 DUF4889 domain-containing protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24570.01 Da        Isoelectric Point: 9.7083

>NTDB_id=475458 JYA46_RS03225 WP_098817842.1 580352..580978(-) (recU) [Staphylococcus aureus strain CBS2016-05]
MNYPNGKPYRKNSAIDRVKKTAAFSNIEYGGRGMSLEKDIEHSNAFYLKSDIAVIHKKPTPVEIVNVNYPKRSKAVINEA
YFRTPSTTDYNGVYQGYYIDFEAKETKNKTSFPLNNIHDHQVEHMKNAYQQKGIVFLMIRFKTLDEVYLLPYSKFEIFWK
RYKDNIKKSITVDEIRKNGYHIPYQYQPRLDYLKAVDKLILDESEDRV

Nucleotide


Download         Length: 627 bp        

>NTDB_id=475458 JYA46_RS03225 WP_098817842.1 580352..580978(-) (recU) [Staphylococcus aureus strain CBS2016-05]
ATGAATTATCCAAATGGTAAACCATATCGTAAAAATAGTGCTATAGACAGAGTGAAAAAGACCGCTGCCTTTAGTAATAT
TGAGTATGGTGGACGTGGTATGTCACTTGAAAAAGATATCGAACATTCAAATGCGTTTTATCTTAAAAGCGACATTGCAG
TTATTCACAAAAAGCCTACGCCAGTAGAAATAGTTAATGTCAACTATCCTAAACGGAGTAAAGCTGTGATTAACGAAGCT
TATTTTCGTACACCTTCAACAACTGATTACAACGGCGTTTATCAAGGTTATTATATTGATTTTGAAGCAAAGGAAACTAA
AAACAAGACGTCCTTTCCTTTAAATAATATTCATGACCATCAAGTCGAACATATGAAAAATGCATATCAACAAAAAGGTA
TTGTGTTTTTAATGATTCGTTTTAAAACGCTAGATGAAGTTTATCTTTTACCCTATTCAAAATTCGAAATATTTTGGAAG
AGATATAAAGATAATATTAAAAAGTCTATAACAGTTGATGAAATACGAAAAAATGGTTACCATATTCCTTATCAGTATCA
ACCAAGATTAGACTATCTAAAAGCAGTTGATAAGTTGATATTAGATGAAAGTGAGGACCGCGTATGA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(32-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

52.657

99.519

0.524