Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   H7F24_RS12135 Genome accession   NZ_CP060290
Coordinates   2412508..2412969 (-) Length   153 a.a.
NCBI ID   WP_008356877.1    Uniprot ID   -
Organism   Bacillus sp. PAMC22265     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 2407508..2417969
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7F24_RS12110 (H7F24_12110) - 2408112..2408996 (+) 885 WP_024424706.1 cation diffusion facilitator family transporter -
  H7F24_RS12115 (H7F24_12115) - 2409060..2409212 (-) 153 WP_162842519.1 hypothetical protein -
  H7F24_RS12120 (H7F24_12120) - 2409514..2410053 (+) 540 WP_024424707.1 RDD family protein -
  H7F24_RS12125 (H7F24_12125) - 2410179..2411489 (+) 1311 WP_034281575.1 MFS transporter -
  H7F24_RS12130 (H7F24_12130) - 2411563..2412471 (+) 909 WP_024424709.1 chemotaxis protein -
  H7F24_RS12135 (H7F24_12135) kre 2412508..2412969 (-) 462 WP_008356877.1 YkyB family protein Regulator
  H7F24_RS12140 (H7F24_12140) - 2413148..2414065 (-) 918 WP_024424710.1 helix-turn-helix domain-containing protein -
  H7F24_RS12145 (H7F24_12145) - 2414179..2415075 (+) 897 WP_024424711.1 DMT family transporter -
  H7F24_RS12150 (H7F24_12150) - 2415227..2415442 (-) 216 WP_024424712.1 hypothetical protein -
  H7F24_RS12155 (H7F24_12155) - 2415701..2416978 (-) 1278 WP_024426859.1 MFS transporter -
  H7F24_RS12160 (H7F24_12160) - 2417052..2417549 (-) 498 WP_039178139.1 L,D-transpeptidase family protein -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17711.30 Da        Isoelectric Point: 10.2452

>NTDB_id=475457 H7F24_RS12135 WP_008356877.1 2412508..2412969(-) (kre) [Bacillus sp. PAMC22265]
MDDYAHTKDIEPTAENIAKAIYTVNRHAKTAPNPKFLYLLKKRALQKLLQEGKGRKVGLHFSNNPKYSQQQSDVLIEIGD
YYFHLPPTKEDFEFLPHLGNLNQSYRNPKANMSLNRAKQILQTYVGLKEKPAATKQKSHYTKPVFKRLGESYF

Nucleotide


Download         Length: 462 bp        

>NTDB_id=475457 H7F24_RS12135 WP_008356877.1 2412508..2412969(-) (kre) [Bacillus sp. PAMC22265]
ATGGACGATTATGCTCATACTAAAGACATAGAACCTACAGCAGAAAACATCGCAAAAGCCATTTATACTGTTAACCGCCA
TGCTAAAACCGCACCAAACCCCAAGTTTCTTTATCTTTTGAAAAAACGCGCGCTGCAAAAACTATTGCAAGAAGGTAAAG
GAAGAAAAGTGGGCCTACATTTCTCTAACAATCCCAAGTATAGTCAACAACAGTCCGACGTGCTGATTGAAATTGGAGAT
TATTATTTTCACCTGCCACCAACGAAAGAAGACTTCGAATTTTTGCCACACTTAGGAAATTTAAATCAATCATATCGCAA
TCCGAAAGCGAATATGTCATTAAACCGAGCAAAGCAAATACTTCAAACGTATGTCGGTTTAAAAGAAAAACCTGCCGCCA
CAAAACAAAAATCACATTACACAAAGCCCGTCTTCAAACGTCTCGGGGAAAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

75.974

100

0.765