Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   JYA46_RS02780 Genome accession   NZ_CP070991
Coordinates   491343..493022 (+) Length   559 a.a.
NCBI ID   WP_210994248.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CBS2016-05     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 486343..498022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYA46_RS02750 (JYA46_000550) - 487197..487559 (+) 363 WP_000241588.1 Asp23/Gls24 family envelope stress response protein -
  JYA46_RS02755 (JYA46_000551) nusB 487619..488008 (+) 390 WP_000087385.1 transcription antitermination factor NusB -
  JYA46_RS02760 (JYA46_000552) xseA 488025..489362 (+) 1338 WP_072491754.1 exodeoxyribonuclease VII large subunit -
  JYA46_RS02765 (JYA46_000553) - 489355..489585 (+) 231 WP_000159865.1 exodeoxyribonuclease VII small subunit -
  JYA46_RS02770 (JYA46_000554) - 489563..490444 (+) 882 WP_072491755.1 polyprenyl synthetase family protein -
  JYA46_RS02775 (JYA46_000555) argR 490875..491327 (+) 453 WP_001124985.1 transcriptional regulator ArgR -
  JYA46_RS02780 (JYA46_000556) recN 491343..493022 (+) 1680 WP_210994248.1 DNA repair protein RecN Machinery gene
  JYA46_RS02785 (JYA46_000557) lpdA 493175..494596 (+) 1422 WP_001291540.1 dihydrolipoyl dehydrogenase -
  JYA46_RS02790 (JYA46_000558) - 494612..495604 (+) 993 WP_000568357.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -
  JYA46_RS02795 (JYA46_000559) - 495604..496587 (+) 984 WP_001096637.1 alpha-ketoacid dehydrogenase subunit beta -
  JYA46_RS02800 (JYA46_000560) - 496600..497874 (+) 1275 WP_072491756.1 dihydrolipoamide acetyltransferase family protein -

Sequence

Protein


Download         Length: 559 a.a.        Molecular weight: 64272.88 Da        Isoelectric Point: 4.7316

>NTDB_id=475455 JYA46_RS02780 WP_210994248.1 491343..493022(+) (recN) [Staphylococcus aureus strain CBS2016-05]
MLQTLSIKQFAIIEELEIQFSDGLTVLSGETGSGKSIIIDAIGQLIGMRASSDFVRHGEKKAVIEGIFDIDESKDAIHIL
KNMDIDVDEDFLLVKREIFSSGKSLCKINNQTVTLQDLRKVMQELLDIHGQHETQSLLKQKYHLTLLDNYAESRYQDLLD
KYHQTFQNYKAKKKELEDLESADQALLQRLDLMKFQLEELSEAHLKEGEIEQLEIDIKRIQNSEKLSLALNNAHMTLTDE
NAITDRLYELSNHLLTINDIVPNKYDKLKEDIDQFYYILEDAKHELYDEMANTEFDEQVLNEYESRMNLLNNLKRKYGKD
ISELIAYQEKLNNEINKIENYEQSTSQLREEINALYNQVIEVGQALSKQRRIVARELRDHIVSEIQNLQMKDANLEISFK
KLEEPNIDGIEFVEFLISPNKGEPLKSLNKIASGGELSRIMLALKSIFVKSRGQTAILFDEVDSGVSGQAAQKMAEKMRD
IAEYIQVICISHLPQVASMSDHHLLISKSSKDDRTTTQVQELIGDDKVDEIARMISGASVTDLTRENAREMIQHNQRYR

Nucleotide


Download         Length: 1680 bp        

>NTDB_id=475455 JYA46_RS02780 WP_210994248.1 491343..493022(+) (recN) [Staphylococcus aureus strain CBS2016-05]
ATGTTACAAACCTTATCAATCAAGCAATTTGCTATTATTGAAGAGTTAGAAATTCAATTTTCTGATGGTTTAACTGTTTT
AAGTGGTGAAACGGGTTCAGGTAAGTCAATTATTATAGATGCAATTGGACAATTAATTGGAATGAGAGCTTCATCTGATT
TTGTAAGACATGGTGAAAAAAAGGCTGTCATCGAAGGTATATTTGATATTGACGAGAGTAAAGATGCTATACATATATTG
AAAAATATGGATATTGATGTAGATGAAGATTTTTTATTAGTTAAACGGGAAATTTTTAGCTCTGGTAAAAGTCTTTGTAA
AATTAATAATCAAACAGTTACTTTACAAGATTTACGAAAAGTTATGCAAGAATTATTAGATATTCATGGCCAACATGAAA
CGCAGTCTTTGTTGAAACAAAAATACCATTTAACATTATTGGATAATTACGCAGAATCACGTTATCAAGATTTGTTGGAT
AAATATCACCAAACTTTTCAAAATTATAAAGCCAAAAAGAAAGAGTTAGAAGATTTAGAATCAGCAGACCAAGCATTGCT
GCAGCGTTTAGATTTAATGAAATTTCAATTAGAAGAATTGTCTGAAGCACATCTAAAAGAAGGCGAAATAGAGCAACTTG
AAATAGATATTAAACGCATTCAAAACTCTGAAAAATTAAGCTTAGCACTTAATAACGCACATATGACATTAACGGATGAA
AATGCTATCACTGATCGTTTGTATGAACTAAGCAACCATTTGTTAACAATAAACGATATAGTTCCAAACAAATATGACAA
ATTAAAAGAAGATATTGATCAATTTTATTACATTTTAGAAGATGCAAAACATGAGTTATACGATGAAATGGCTAATACAG
AATTCGACGAACAAGTGTTAAACGAGTATGAATCTCGTATGAATTTGCTGAATAATTTAAAACGCAAATATGGAAAAGAT
ATTTCAGAATTAATCGCATATCAAGAAAAACTTAATAATGAAATCAATAAAATTGAAAACTATGAACAAAGTACATCGCA
GTTACGAGAAGAAATAAATGCATTGTATAATCAAGTTATAGAGGTTGGACAAGCGCTATCAAAGCAGCGTCGTATAGTCG
CTAGGGAGTTGAGAGACCACATTGTATCGGAAATTCAAAACTTACAAATGAAAGACGCAAATCTTGAGATTTCATTTAAA
AAATTAGAAGAACCGAATATTGATGGAATCGAATTTGTAGAATTTTTAATCAGTCCTAATAAAGGGGAACCATTAAAAAG
TTTAAATAAAATTGCGTCAGGTGGAGAACTTTCTAGAATTATGTTAGCGTTAAAAAGTATTTTTGTTAAATCGAGAGGTC
AAACTGCAATTTTATTCGATGAGGTTGACTCAGGTGTATCTGGACAAGCCGCACAAAAAATGGCAGAGAAAATGCGAGAT
ATAGCAGAATATATACAAGTTATTTGTATTTCTCACTTGCCACAAGTTGCATCGATGAGCGACCATCATTTATTAATTTC
GAAATCATCAAAAGATGATCGTACAACAACACAAGTTCAAGAGTTAATTGGCGATGATAAAGTAGATGAAATTGCACGAA
TGATTTCAGGTGCAAGTGTTACTGATTTAACTCGTGAAAATGCAAGAGAAATGATACAACACAATCAAAGATATAGATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.409

100

0.442