Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   H7F24_RS05195 Genome accession   NZ_CP060290
Coordinates   1018136..1018426 (-) Length   96 a.a.
NCBI ID   WP_087975202.1    Uniprot ID   -
Organism   Bacillus sp. PAMC22265     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1013136..1023426
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7F24_RS05155 (H7F24_05155) - 1013168..1013497 (+) 330 WP_024425625.1 cyclic-di-AMP receptor -
  H7F24_RS05160 (H7F24_05160) - 1013510..1013950 (+) 441 WP_024425626.1 YaaR family protein -
  H7F24_RS05165 (H7F24_05165) holB 1013962..1014951 (+) 990 WP_024425627.1 DNA polymerase III subunit delta' -
  H7F24_RS05170 (H7F24_05170) - 1014954..1015781 (+) 828 WP_024425628.1 stage 0 sporulation family protein -
  H7F24_RS05175 (H7F24_05175) yabA 1015796..1016149 (+) 354 WP_024425629.1 DNA replication initiation control protein YabA -
  H7F24_RS05180 (H7F24_05180) - 1016205..1016948 (+) 744 WP_024425630.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  H7F24_RS05185 (H7F24_05185) - 1016935..1017234 (+) 300 WP_024425631.1 GIY-YIG nuclease family protein -
  H7F24_RS05190 (H7F24_05190) rsmI 1017209..1018090 (+) 882 WP_185854028.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  H7F24_RS05195 (H7F24_05195) abrB 1018136..1018426 (-) 291 WP_087975202.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  H7F24_RS05200 (H7F24_05200) metG 1018947..1020947 (+) 2001 WP_185854029.1 methionine--tRNA ligase -
  H7F24_RS05205 (H7F24_05205) - 1021029..1021796 (+) 768 WP_024425634.1 TatD family hydrolase -
  H7F24_RS05210 (H7F24_05210) - 1022041..1023243 (+) 1203 WP_044334281.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10853.65 Da        Isoelectric Point: 7.9655

>NTDB_id=475436 H7F24_RS05195 WP_087975202.1 1018136..1018426(-) (abrB) [Bacillus sp. PAMC22265]
MKMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLANGKLVLSREG
AEQIINEIQNQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=475436 H7F24_RS05195 WP_087975202.1 1018136..1018426(-) (abrB) [Bacillus sp. PAMC22265]
ATGAAGATGAAATCTACAGGTATTGTACGTAAAGTTGACGAATTAGGACGCGTGGTGATTCCAATCGAACTTCGCCGTAC
GCTAGGAATCGCTGAAAAAGACGCTTTGGAAATTTATGTTGATGATGAAAAAATTATCTTAAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACAGGTGAAGTATCAGACGATAACCTTAAACTTGCTAATGGTAAATTAGTTCTTAGCCGCGAAGGT
GCAGAGCAAATCATTAACGAAATCCAAAACCAACTTCAATCACAAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)

AbrB C-terminal domain (AbrB_C)

(55-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

93.75

100

0.938