Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   H7F24_RS04960 Genome accession   NZ_CP060290
Coordinates   973929..975041 (+) Length   370 a.a.
NCBI ID   WP_044333186.1    Uniprot ID   -
Organism   Bacillus sp. PAMC22265     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 968929..980041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7F24_RS04935 (H7F24_04935) rnpA 969680..970039 (-) 360 WP_024427652.1 ribonuclease P protein component -
  H7F24_RS04940 (H7F24_04940) rpmH 970118..970252 (-) 135 WP_073208224.1 50S ribosomal protein L34 -
  H7F24_RS04945 (H7F24_04945) dnaA 970873..972213 (+) 1341 WP_024424073.1 chromosomal replication initiator protein DnaA -
  H7F24_RS04950 (H7F24_04950) dnaN 972410..973546 (+) 1137 WP_024424074.1 DNA polymerase III subunit beta -
  H7F24_RS04955 (H7F24_04955) yaaA 973697..973912 (+) 216 WP_008360916.1 S4 domain-containing protein YaaA -
  H7F24_RS04960 (H7F24_04960) recF 973929..975041 (+) 1113 WP_044333186.1 DNA replication/repair protein RecF Machinery gene
  H7F24_RS04965 (H7F24_04965) remB 975059..975304 (+) 246 WP_024424076.1 extracellular matrix regulator RemB -
  H7F24_RS04970 (H7F24_04970) gyrB 975362..977278 (+) 1917 WP_024424077.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  H7F24_RS04975 (H7F24_04975) gyrA 977511..980015 (+) 2505 WP_024424078.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42559.64 Da        Isoelectric Point: 7.3662

>NTDB_id=475434 H7F24_RS04960 WP_044333186.1 973929..975041(+) (recF) [Bacillus sp. PAMC22265]
MYIQSLALTSYRNYEHTELQFDNKVNVMIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDQDYAKIEGRVIKKNGP
LPMQLVISKKGKKGKVNHIEQQKLSHYVGALNTIMFAPEDLSLVKGSPQIRRRFLDMEIGQVSAVYLHDLSLYQKILSQR
NHYLKQLQTRKQTDQAMLEILTEQLIDAAAKVVKRRLTFTKQLEKWAQPLHFGISRELETLTLQYQTAIEVSEASDLSKI
KNSYEESFQKLRDREIDRGVTLWGPHRDDLLFFVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVEGIDHATLKEAEIFRVASGKVID

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=475434 H7F24_RS04960 WP_044333186.1 973929..975041(+) (recF) [Bacillus sp. PAMC22265]
ATGTACATTCAAAGTCTGGCGTTAACTTCATACCGAAACTATGAACACACTGAGCTTCAATTCGACAATAAGGTGAATGT
CATGATCGGTGAGAATGCCCAAGGTAAAACGAACTTGATGGAAGCGATCTATGTATTGTCGATGGCAAAGTCTCATCGTA
CGTCAAATGATAAAGAACTTATCCGATGGGACCAAGACTATGCTAAAATAGAAGGTAGAGTCATTAAAAAAAATGGTCCA
CTCCCAATGCAGCTCGTGATCTCAAAAAAAGGGAAAAAGGGCAAGGTCAATCACATTGAACAACAGAAGCTCAGTCATTA
TGTTGGTGCGTTAAACACCATCATGTTTGCGCCAGAGGACTTAAGTCTTGTGAAGGGCAGCCCGCAAATCCGCAGAAGAT
TCCTCGACATGGAGATTGGACAAGTTTCTGCTGTCTACTTGCATGATTTATCGCTCTATCAAAAAATCCTTTCTCAGCGG
AATCATTACTTGAAACAATTGCAGACAAGAAAGCAAACGGATCAAGCGATGCTGGAGATTTTAACAGAGCAGTTGATTGA
TGCGGCAGCGAAAGTGGTCAAAAGACGACTGACTTTTACGAAACAGCTCGAAAAATGGGCGCAGCCGCTGCATTTTGGGA
TTTCTAGAGAGCTAGAAACACTTACGCTCCAATACCAGACGGCAATAGAGGTATCAGAAGCGTCAGACTTGTCGAAAATA
AAGAATAGCTATGAAGAATCGTTTCAGAAACTAAGAGACAGAGAAATAGACCGAGGGGTGACCCTGTGGGGACCTCACAG
AGATGACCTGCTTTTCTTTGTGAATGGTCGGGATGTTCAGACATATGGCTCTCAAGGGCAGCAAAGGACAACAGCTCTTT
CACTAAAGCTGGCAGAAATTGATCTGATACATGAAGAAATCGGAGAATATCCCATTCTTCTACTTGATGATGTGTTATCT
GAACTTGATGATTACAGACAGTCTCATTTGCTCCATACCATTCAGGGACGTGTACAGACCTTCGTCACCACAACAAGTGT
TGAAGGCATCGATCACGCCACCCTGAAAGAAGCGGAAATTTTCAGAGTAGCCAGTGGAAAAGTAATTGACTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

83.469

99.73

0.832