Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   I653_RS19250 Genome accession   NC_020832
Coordinates   3881968..3882657 (-) Length   229 a.a.
NCBI ID   WP_015483924.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis str. BAB-1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3876968..3887657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I653_RS19230 (I653_19470) yxeA 3877873..3878220 (-) 348 WP_003227084.1 YxeA family protein -
  I653_RS19235 (I653_19475) yxdM 3878234..3880102 (-) 1869 WP_015385107.1 ABC transporter permease YxdM -
  I653_RS19240 (I653_19480) yxdL 3880077..3880850 (-) 774 WP_014115765.1 ABC transporter ATP-binding protein YxdL -
  I653_RS19245 (I653_19485) yxdK 3880994..3881971 (-) 978 WP_015385109.1 two-component system sensor histidine kinase YxdK -
  I653_RS19250 (I653_19490) braR 3881968..3882657 (-) 690 WP_015483924.1 two-component system response regulator YxdJ Regulator
  I653_RS19255 (I653_19495) iolJ 3882765..3883637 (-) 873 WP_015483925.1 6-phospho-5-dehydro-2-deoxy-D-gluconate aldolase -
  I653_RS19260 (I653_19500) iolI 3883658..3884494 (-) 837 WP_015483926.1 2-keto-myo-inositol isomerase -
  I653_RS19265 (I653_19505) iolH 3884580..3885449 (-) 870 WP_014478480.1 sugar phosphate isomerase/epimerase -
  I653_RS19270 (I653_19510) iolG 3885469..3886503 (-) 1035 WP_003244482.1 bifunctional inositol 2-dehydrogenase/D-chiro-inositol 1-dehydrogenase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26630.37 Da        Isoelectric Point: 4.8564

>NTDB_id=47543 I653_RS19250 WP_015483924.1 3881968..3882657(-) (braR) [Bacillus subtilis subsp. subtilis str. BAB-1]
MNKIMIVEDSEDIRGLLQNYLEKYGYQTVVAADFTTVLDVFLREKPDVVLLDINLPAYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKES
KLLEVLLERGEKVTSRDRLMEKTWDTDIFIDDNTLNVYITRLRKKLRELNAPVSIEAVRGEGYQLRAQS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=47543 I653_RS19250 WP_015483924.1 3881968..3882657(-) (braR) [Bacillus subtilis subsp. subtilis str. BAB-1]
TTGAATAAAATCATGATTGTGGAAGACAGTGAAGACATTCGCGGACTATTGCAGAATTACCTTGAAAAATACGGATATCA
AACAGTGGTCGCCGCGGATTTTACAACTGTTCTTGATGTCTTTTTGCGGGAGAAGCCCGATGTGGTGCTGCTTGATATCA
ATTTGCCGGCATATGACGGATATTATTGGTGCCGGCAGATCCGCCAGCACTCCACAAGCCCAATCATCTTTATTTCTGCC
AGAAGCGGGGAAATGGATCAGGTAATGGCGATTGAAAATGGGGGAGACGATTATATCGAAAAACCGTTTTCTTATGATAT
TGTGCTGGCGAAAATCAAAAGCCAGATCCGGAGGGCGTACGGGGAGTACGCCGCAAAGCAGGGAGAGAAAGTGGTTGAAT
ATGCCGGCGTCCAGCTCTTTGTGGAACGGTTTGAACTGCGTTTTCAGGATGAAAAAAGCGAGCTTTCTAAAAAAGAAAGC
AAGCTCTTGGAAGTGCTGCTTGAGCGGGGAGAAAAGGTGACGAGTCGGGACCGTCTCATGGAAAAGACGTGGGACACCGA
CATATTCATCGATGATAATACACTTAACGTGTATATCACGCGGCTCAGAAAAAAACTGCGGGAGCTGAATGCGCCTGTTT
CTATTGAAGCGGTGCGGGGCGAAGGCTACCAGCTGAGGGCGCAGTCATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

41.704

97.38

0.406

Multiple sequence alignment