Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   H7992_RS13960 Genome accession   NZ_CP060287
Coordinates   2859351..2861048 (-) Length   565 a.a.
NCBI ID   WP_067209878.1    Uniprot ID   A0A7G8X174
Organism   Sporosarcina sp. resist     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2854351..2866048
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7992_RS13945 (H7992_13945) - 2854361..2855923 (-) 1563 WP_187044994.1 DUF342 domain-containing protein -
  H7992_RS13950 (H7992_13950) spo0A 2857174..2857965 (-) 792 WP_067209873.1 sporulation transcription factor Spo0A -
  H7992_RS13955 (H7992_13955) - 2858219..2859187 (-) 969 WP_067209875.1 SpoIVB peptidase S55 domain-containing protein -
  H7992_RS13960 (H7992_13960) recN 2859351..2861048 (-) 1698 WP_067209878.1 DNA repair protein RecN Machinery gene
  H7992_RS13965 (H7992_13965) ahrC 2861064..2861513 (-) 450 WP_067209880.1 transcriptional regulator AhrC/ArgR -
  H7992_RS13970 (H7992_13970) - 2861605..2862426 (-) 822 WP_067209882.1 TlyA family RNA methyltransferase -
  H7992_RS13975 (H7992_13975) dxs 2862423..2864324 (-) 1902 WP_067213960.1 1-deoxy-D-xylulose-5-phosphate synthase -
  H7992_RS13980 (H7992_13980) - 2864421..2865305 (-) 885 WP_187044995.1 polyprenyl synthetase family protein -
  H7992_RS13985 (H7992_13985) xseB 2865298..2865507 (-) 210 WP_067213961.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 565 a.a.        Molecular weight: 63496.11 Da        Isoelectric Point: 4.7981

>NTDB_id=475342 H7992_RS13960 WP_067209878.1 2859351..2861048(-) (recN) [Sporosarcina sp. resist]
MLREISIKNFAIIENLEITFDEGLTVLTGETGAGKSIIIDAVQLLAGGRGSQEFIRHGATKAELEGLFTIEEESHPIIAQ
LAEFGIDAQDGVVILRRDLNSNGKTVCRVNGKLVTIAILREIGSQLIDIHGQHENQELMHERSHIHLLDHFAGEKLEHAY
ENYFELYESYRKLKRKLEKADDNEQQVAQRIDLYSFQLKEINAAGLVIGEEDQLEAEKQKLQNFNRLFERLNTAYVSISG
DTHALDWVGSAMSDMEDAASVDKSLKLHAETIATSFYALQDTAHELKSILDDMEFDPARLEVVEERLALHISLKRKYGKT
IEDILLYRDKITEELENLVSRDERLFAEQEKLAQLLQDLEIEAEELSIIRQNSSIQLENAIMEQLEQLHMGKASFKVEIT
RKAAGTFDSNGYDDVNFLISTNVGEPLKPLVKVASGGEISRIMLAIKTIFSKHQGVTSLIFDEVDTGVSGRVAQAIAEKI
AIIATDSQVLCISHLPQVAAMADHHYLIKKNVISDRTMTEIHDVIESDRTEELSRMLSGAETTPLTLKHAEELLKLAAER
KKSFR

Nucleotide


Download         Length: 1698 bp        

>NTDB_id=475342 H7992_RS13960 WP_067209878.1 2859351..2861048(-) (recN) [Sporosarcina sp. resist]
TTGTTACGTGAAATCTCCATAAAAAACTTTGCAATCATTGAAAACCTTGAAATAACATTTGATGAAGGCCTAACCGTATT
AACTGGAGAAACAGGCGCGGGAAAATCAATTATTATCGATGCTGTCCAACTACTTGCGGGTGGAAGAGGATCACAGGAAT
TTATCCGTCATGGAGCAACAAAAGCCGAACTGGAAGGGCTTTTCACTATTGAAGAAGAATCGCATCCTATTATTGCACAA
TTAGCTGAATTTGGTATTGATGCACAGGATGGCGTCGTTATATTGCGGCGCGATTTGAATTCAAATGGTAAAACGGTTTG
CCGTGTCAATGGAAAGCTTGTGACGATCGCAATTTTGAGAGAAATTGGTTCACAGTTGATTGACATACATGGTCAACACG
AAAATCAGGAATTAATGCATGAAAGAAGTCATATTCATTTACTCGATCATTTTGCTGGTGAAAAACTAGAGCATGCCTAT
GAAAACTATTTCGAGCTGTATGAAAGCTATCGAAAACTGAAACGGAAGCTTGAGAAGGCAGACGATAATGAGCAACAAGT
TGCACAACGTATCGATTTGTATTCATTCCAGCTAAAAGAGATTAATGCAGCTGGACTCGTTATTGGTGAAGAGGACCAAC
TCGAAGCAGAAAAACAAAAGCTTCAAAACTTCAATCGCTTATTTGAGCGATTGAATACCGCATATGTGTCAATCAGTGGA
GATACACATGCGCTTGACTGGGTCGGTTCTGCGATGAGTGATATGGAGGATGCAGCGTCGGTCGATAAAAGCTTGAAACT
GCATGCTGAAACGATTGCAACAAGTTTCTATGCCTTACAAGATACTGCACACGAGCTCAAAAGTATACTTGATGATATGG
AATTTGATCCTGCAAGACTCGAAGTAGTTGAAGAGCGCCTAGCACTCCACATCTCCTTGAAAAGGAAGTATGGCAAAACG
ATTGAAGACATTCTTTTGTATCGTGATAAAATCACAGAGGAACTTGAAAACTTAGTAAGTAGGGATGAACGTCTTTTTGC
CGAGCAGGAAAAACTTGCGCAACTTCTCCAAGATCTTGAAATCGAAGCAGAAGAGTTATCAATTATCCGCCAAAATTCGT
CTATTCAATTAGAAAATGCAATTATGGAACAACTGGAGCAACTTCATATGGGAAAAGCTTCTTTTAAAGTGGAAATTACT
CGAAAAGCAGCAGGTACTTTCGATTCAAATGGATATGACGATGTGAACTTCTTGATCTCGACAAACGTTGGGGAACCGTT
GAAACCACTTGTAAAAGTAGCGTCGGGCGGTGAAATTTCCCGTATAATGTTAGCGATAAAGACAATATTCTCTAAACATC
AAGGAGTTACTTCACTTATTTTTGACGAAGTGGATACGGGTGTAAGCGGAAGAGTTGCACAAGCAATTGCGGAAAAAATA
GCAATAATTGCAACAGATTCTCAGGTGCTTTGTATTTCTCATTTACCGCAAGTCGCCGCAATGGCGGATCACCATTACCT
CATTAAAAAAAATGTAATAAGTGATAGGACGATGACGGAAATTCATGATGTCATCGAATCAGACAGGACAGAAGAATTGT
CCAGGATGTTGTCTGGAGCTGAAACTACGCCATTAACATTAAAGCATGCGGAAGAGTTGTTGAAATTGGCCGCAGAACGT
AAGAAATCGTTTAGATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-224)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G8X174

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

50.521

100

0.515