Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   H7X63_RS18910 Genome accession   NZ_CP060285
Coordinates   3547655..3548515 (+) Length   286 a.a.
NCBI ID   WP_001152285.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain XYAB2018     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3542655..3553515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7X63_RS16900 secG 3543259..3543588 (-) 330 WP_000555572.1 preprotein translocase subunit SecG -
  H7X63_RS16905 tpiA 3543601..3544395 (-) 795 WP_000016939.1 triose-phosphate isomerase -
  H7X63_RS16910 pilB 3544687..3546399 (+) 1713 WP_001274990.1 type IV-A pilus assembly ATPase PilB Machinery gene
  H7X63_RS16915 pilC 3546429..3547655 (+) 1227 WP_000279216.1 type II secretion system F family protein Machinery gene
  H7X63_RS18910 pilD 3547655..3548515 (+) 861 WP_001152285.1 prepilin peptidase Machinery gene
  H7X63_RS16925 coaE 3548517..3549113 (+) 597 WP_000874125.1 dephospho-CoA kinase -
  H7X63_RS16930 - 3549110..3550024 (-) 915 WP_000075011.1 DMT family transporter -
  H7X63_RS16935 rlmB 3550060..3550809 (-) 750 WP_001118149.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  H7X63_RS16940 - 3550911..3551237 (-) 327 WP_000099685.1 pyrimidine/purine nucleoside phosphorylase -
  H7X63_RS16945 - 3551314..3552624 (-) 1311 WP_000753294.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32153.54 Da        Isoelectric Point: 7.1042

>NTDB_id=475302 H7X63_RS18910 WP_001152285.1 3547655..3548515(+) (pilD) [Acinetobacter baumannii strain XYAB2018]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPRMMEQDWQQECQMLLNPEQPIIDHERLTLNKPASSCPACQQP
IRWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLILTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
IGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=475302 H7X63_RS18910 WP_001152285.1 3547655..3548515(+) (pilD) [Acinetobacter baumannii strain XYAB2018]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTAATTTACCGCACGCCAAGAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCAATTATTGATCATGAGAGGTTAACTTTAAATAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGCCATTGCCAACACCCGATCAG
TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTAGTCATGGTATTTGGCCCAACCATACAAA
TGCTTTTTGGACTCATCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
ATTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(22-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

98.951

100

0.99
  pilD Acinetobacter nosocomialis M2

97.902

100

0.979
  pilD Vibrio cholerae strain A1552

52.941

95.105

0.503
  pilD Vibrio campbellii strain DS40M4

52.03

94.755

0.493
  pilD Neisseria gonorrhoeae MS11

48.485

92.308

0.448