Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   I653_RS16725 Genome accession   NC_020832
Coordinates   3355707..3356420 (-) Length   237 a.a.
NCBI ID   WP_015384738.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis str. BAB-1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3350707..3361420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I653_RS16705 (I653_16880) ghrB 3350852..3351829 (+) 978 WP_080030695.1 D-glycerate dehydrogenase -
  I653_RS16710 (I653_16885) psdB 3351866..3353806 (-) 1941 WP_015483744.1 lantibiotic ABC transporter permease PsdB -
  I653_RS16715 (I653_16890) psdA 3353781..3354560 (-) 780 WP_003228167.1 lantibiotic ABC transporter ATP-binding protein PsdA -
  I653_RS16720 (I653_16895) psdS 3354643..3355713 (-) 1071 WP_015483745.1 two-component sensor histidine kinase PsdS -
  I653_RS16725 (I653_16900) braR 3355707..3356420 (-) 714 WP_015384738.1 two-component system response regulator PsdR Regulator
  I653_RS16730 (I653_16905) yvzJ 3356567..3356776 (+) 210 WP_003243327.1 lipoprotein -
  I653_RS16735 (I653_16910) yvcN 3356812..3357576 (-) 765 WP_015384739.1 arylamine N-acetyltransferase -
  I653_RS16740 (I653_16915) crh 3357577..3357834 (-) 258 WP_003219835.1 HPr family phosphocarrier protein -
  I653_RS16745 (I653_16920) whiA 3357858..3358808 (-) 951 WP_003243775.1 DNA-binding protein WhiA -
  I653_RS16750 (I653_16925) mgfK 3358831..3359784 (-) 954 WP_003244450.1 gluconeogenesis morphogenetic factor -
  I653_RS16755 (I653_16930) rapZ 3359786..3360673 (-) 888 WP_003243903.1 RNase adapter RapZ -
  I653_RS16760 (I653_16935) rppI 3360698..3361174 (-) 477 WP_010886622.1 8-oxo-dGTP diphosphatase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27529.40 Da        Isoelectric Point: 4.6774

>NTDB_id=47528 I653_RS16725 WP_015384738.1 3355707..3356420(-) (braR) [Bacillus subtilis subsp. subtilis str. BAB-1]
MYRILLVEDDERIASLLGGHLQKYGYEVKIAEQLNDIKLEFAEMKPDLVLLDINLPFFDGFYWCRQIRTISNAPIIFISA
RTDELNQVMAIENGGDDYITKPFHLEVVMAKIKSVLRRTYGEYSPSLPQESRIVELGGLTIYPDQNEAEWNSSRILFSQK
EFQLLSIFVREHKKIVSRDELLEALWDDVDFVDDNTLTVNVNRLRRKLENAGLKDCISTIRGQGYQFQVNRKDEAEC

Nucleotide


Download         Length: 714 bp        

>NTDB_id=47528 I653_RS16725 WP_015384738.1 3355707..3356420(-) (braR) [Bacillus subtilis subsp. subtilis str. BAB-1]
GTGTATCGGATTTTGCTTGTGGAAGATGATGAGCGGATTGCTTCTTTGCTGGGCGGTCATCTTCAAAAATACGGATATGA
AGTGAAAATTGCTGAACAGCTGAATGATATAAAATTGGAATTTGCAGAAATGAAGCCTGATCTTGTGCTGCTTGATATCA
ACCTGCCTTTTTTTGACGGATTTTATTGGTGCAGGCAAATCCGTACCATTTCCAATGCGCCGATTATCTTTATATCGGCA
CGGACCGATGAGCTGAATCAGGTAATGGCGATTGAAAATGGCGGCGATGATTATATCACAAAGCCGTTCCATCTGGAGGT
AGTGATGGCCAAAATCAAAAGCGTCCTGCGCCGCACATATGGTGAATATTCGCCCTCTTTGCCGCAGGAATCTAGAATAG
TGGAGCTTGGTGGGCTGACGATTTATCCTGATCAAAATGAGGCCGAATGGAACAGCTCCCGTATTCTGTTTTCCCAAAAA
GAATTTCAGCTTCTCTCTATTTTTGTGAGGGAGCATAAAAAAATTGTTTCTCGTGATGAACTATTGGAGGCGTTATGGGA
TGACGTTGATTTTGTCGATGACAATACGTTAACGGTCAATGTCAACCGGCTGCGGAGAAAACTGGAGAATGCCGGACTGA
AAGATTGCATTTCCACAATCAGAGGACAAGGCTATCAATTTCAAGTCAATCGGAAGGATGAAGCGGAGTGTTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

45.536

94.515

0.43

Multiple sequence alignment