Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   H7X63_RS01555 Genome accession   NZ_CP060285
Coordinates   330003..330821 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain XYAB2018     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 325003..335821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7X63_RS01520 - 325586..325715 (-) 130 Protein_290 hypothetical protein -
  H7X63_RS01525 rpoZ 325754..326032 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  H7X63_RS01530 gmk 326105..326734 (-) 630 WP_000015937.1 guanylate kinase -
  H7X63_RS01535 ispH 326857..327807 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  H7X63_RS01540 fimU 327977..328450 (+) 474 WP_001214061.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  H7X63_RS01545 pilV 328444..329004 (+) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  H7X63_RS01550 pilW 329005..330006 (+) 1002 WP_000079200.1 PilW family protein Machinery gene
  H7X63_RS01555 pilX 330003..330821 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  H7X63_RS01560 pilY1 330833..334687 (+) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  H7X63_RS01565 pilY2 334700..335182 (+) 483 WP_001046420.1 type IV pilin protein Machinery gene
  H7X63_RS01570 pilE 335179..335604 (+) 426 WP_000788342.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=475265 H7X63_RS01555 WP_000149374.1 330003..330821(+) (pilX) [Acinetobacter baumannii strain XYAB2018]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=475265 H7X63_RS01555 WP_000149374.1 330003..330821(+) (pilX) [Acinetobacter baumannii strain XYAB2018]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAATGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993