Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   H7969_RS10170 Genome accession   NZ_CP060280
Coordinates   2026202..2027389 (+) Length   395 a.a.
NCBI ID   WP_002224381.1    Uniprot ID   -
Organism   Neisseria meningitidis strain LNP24198     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 2021202..2032389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7969_RS10155 (H7969_10155) - 2022125..2022724 (+) 600 WP_002216221.1 DUF4390 domain-containing protein -
  H7969_RS10160 (H7969_10160) - 2022724..2024841 (+) 2118 WP_002224380.1 PAS domain-containing sensor histidine kinase -
  H7969_RS10165 (H7969_10165) - 2024834..2026111 (+) 1278 WP_002220140.1 sigma-54 dependent transcriptional regulator -
  H7969_RS10170 (H7969_10170) dprA 2026202..2027389 (+) 1188 WP_002224381.1 DNA-processing protein DprA Machinery gene
  H7969_RS10175 (H7969_10175) - 2027415..2027876 (+) 462 WP_002215351.1 DUF494 domain-containing protein -
  H7969_RS10180 (H7969_10180) topA 2027948..2030254 (+) 2307 WP_002224383.1 type I DNA topoisomerase -
  H7969_RS10185 (H7969_10185) - 2030327..2031022 (-) 696 WP_002216227.1 hypothetical protein -
  H7969_RS10190 (H7969_10190) - 2031713..2032090 (+) 378 WP_002233408.1 helix-turn-helix transcriptional regulator -

Sequence


Protein


Download         Length: 395 a.a.        Molecular weight: 41908.07 Da        Isoelectric Point: 6.3083

>NTDB_id=475229 H7969_RS10170 WP_002224381.1 2026202..2027389(+) (dprA) [Neisseria meningitidis strain LNP24198]
MTEDERFAWLQLAFTPYIGAESFLLLLHHFGSAQNALSAPAEQVAALIRHKQALEAWRNAEKRALARQAAEAALEWEMRD
GCRLMLLQDEDFPEMLAQGLTAPPVLFLRGNVRLLHKPSAAIVGSRYATPQAMRIAKDFGRALGGKGIPVVSGMASGIDT
AAHQGALQAEGGTIAVWGTGIDRIYPPANKNLAYEIAEKGLIVSEFPIGTRPYAGNFPRRNRLIAALSQVTLVVEAALES
GSLITAGLAAEMGREVMAVPGSIDNPHSKGCHKLIKDGAKLTECLDDILNECPGLLQNTGASSYSINKDTPDTGRRAVQT
AYAPPPAAKMPSEGAAGGTAVGGILDKMGFDPIHPDVLAGQLAMPAADLYAALLELELDGSVAAMPGGRYQRIRT

Nucleotide


Download         Length: 1188 bp        

>NTDB_id=475229 H7969_RS10170 WP_002224381.1 2026202..2027389(+) (dprA) [Neisseria meningitidis strain LNP24198]
ATGACAGAGGACGAACGTTTCGCGTGGTTGCAACTGGCTTTTACGCCCTATATCGGTGCGGAAAGTTTCTTGCTGCTGCT
GCACCATTTCGGCAGTGCGCAAAATGCCCTGTCCGCACCGGCGGAACAGGTGGCGGCACTGATACGGCACAAACAGGCGC
TTGAGGCTTGGCGCAATGCGGAAAAACGCGCCTTGGCGCGGCAGGCGGCAGAAGCGGCGTTGGAATGGGAAATGCGGGAC
GGATGCCGTCTGATGCTGCTTCAGGATGAAGATTTCCCCGAAATGCTGGCGCAGGGGCTGACCGCGCCGCCAGTTTTGTT
TTTGCGCGGCAACGTGCGGCTGCTGCACAAGCCTTCCGCCGCCATCGTCGGCAGCCGCTATGCCACGCCGCAGGCGATGC
GGATTGCCAAAGATTTCGGCAGGGCGTTGGGTGGGAAAGGCATTCCCGTCGTGTCGGGTATGGCTTCGGGCATCGACACC
GCCGCCCATCAGGGCGCGTTGCAGGCAGAAGGCGGCACCATCGCCGTGTGGGGGACGGGCATAGACCGCATTTATCCGCC
AGCCAACAAAAACCTTGCTTATGAAATCGCCGAAAAAGGACTGATTGTCAGCGAGTTCCCCATCGGCACGCGGCCGTATG
CCGGCAATTTTCCGCGCCGCAACCGTCTGATTGCTGCCCTGTCGCAGGTTACGCTGGTGGTTGAAGCCGCGTTGGAATCC
GGTTCGCTGATTACCGCCGGCCTGGCGGCAGAAATGGGGCGCGAAGTGATGGCGGTACCCGGCTCGATAGACAATCCGCA
CAGCAAAGGCTGCCACAAACTGATTAAAGACGGCGCGAAACTGACGGAATGTTTGGACGACATCCTGAACGAATGCCCGG
GGCTATTGCAAAATACGGGTGCTTCATCATATTCTATAAATAAGGATACGCCCGACACGGGCCGCCGCGCCGTTCAGACG
GCATACGCCCCGCCGCCTGCCGCAAAAATGCCGTCTGAAGGGGCGGCAGGCGGCACAGCCGTCGGCGGCATACTGGATAA
AATGGGTTTCGACCCCATCCATCCCGACGTGCTTGCCGGACAGTTGGCTATGCCTGCCGCAGATTTGTATGCCGCACTGT
TGGAATTGGAATTGGACGGCAGCGTTGCCGCAATGCCCGGCGGCAGATACCAGCGTATCCGAACTTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Neisseria gonorrhoeae MS11

96.962

100

0.97

  dprA Neisseria gonorrhoeae strain FA1090

96.709

100

0.967

  dprA Neisseria meningitidis strain C311

90.68

100

0.911

  dprA Neisseria meningitidis MC58

90.68

100

0.911

  dprA Vibrio cholerae strain A1552

38.287

100

0.385