Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   H7969_RS00495 Genome accession   NZ_CP060280
Coordinates   107797..108396 (-) Length   199 a.a.
NCBI ID   WP_002221479.1    Uniprot ID   A1KS89
Organism   Neisseria meningitidis strain LNP24198     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 102797..113396
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7969_RS00480 (H7969_00480) pilQ 104258..106567 (-) 2310 WP_002221480.1 type IV pilus secretin PilQ Machinery gene
  H7969_RS00485 (H7969_00485) pilP 106586..107131 (-) 546 WP_002214522.1 pilus assembly protein PilP Machinery gene
  H7969_RS00490 (H7969_00490) - 107149..107796 (-) 648 WP_002217908.1 type 4a pilus biogenesis protein PilO -
  H7969_RS00495 (H7969_00495) pilN 107797..108396 (-) 600 WP_002221479.1 PilN domain-containing protein Machinery gene
  H7969_RS00500 (H7969_00500) pilM 108399..109394 (-) 996 WP_061370891.1 type IV pilus biogenesis protein PilM -
  H7969_RS00505 (H7969_00505) - 109667..112063 (+) 2397 WP_002221477.1 penicillin-binding protein 1A -
  H7969_RS00510 (H7969_00510) yihA 112184..112813 (-) 630 WP_002217904.1 ribosome biogenesis GTP-binding protein YihA/YsxC -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 22243.45 Da        Isoelectric Point: 9.5493

>NTDB_id=475186 H7969_RS00495 WP_002221479.1 107797..108396(-) (pilN) [Neisseria meningitidis strain LNP24198]
MNNLIKINLLPYREEMNKRKQQQFKTLMYGAVLTGVAAVAATYLFIDNMINNQSERNTLLETSIAHLDTELSEIQKLKQE
KDAFLIKKNKVEELQLKRLQAAKILDSLNEAVPGSTYLTSLDAVTADSYRLSGRTSSDNRVAAMMRAMPNTGIFKQPELL
SIKKNNSHQEFTLQATLQPIVKAAESKENPASGNAQEAN

Nucleotide


Download         Length: 600 bp        

>NTDB_id=475186 H7969_RS00495 WP_002221479.1 107797..108396(-) (pilN) [Neisseria meningitidis strain LNP24198]
ATGAACAATTTAATCAAAATCAACCTCCTCCCCTACAGGGAAGAGATGAACAAGCGCAAACAGCAGCAGTTTAAAACGCT
GATGTACGGTGCCGTGCTGACGGGCGTTGCCGCCGTTGCGGCAACCTACCTGTTTATCGACAATATGATCAATAACCAGT
CGGAAAGAAACACGCTGCTGGAAACCTCCATCGCACACTTGGATACCGAGCTGTCGGAAATACAAAAGCTCAAACAGGAA
AAAGATGCCTTCCTGATTAAGAAAAACAAAGTCGAGGAGCTCCAGCTCAAACGCCTCCAAGCCGCAAAAATCCTCGACAG
CCTGAATGAGGCCGTCCCCGGAAGCACCTACCTGACCTCGCTGGATGCCGTTACCGCCGACTCTTATCGGCTCAGCGGCA
GGACATCCAGCGACAACCGCGTTGCCGCCATGATGAGGGCGATGCCCAATACCGGCATATTCAAGCAACCCGAATTGTTA
AGCATCAAGAAAAACAATTCGCATCAAGAATTTACCCTTCAGGCAACATTACAACCCATCGTAAAGGCGGCCGAATCCAA
AGAGAATCCGGCTTCGGGAAACGCACAGGAGGCAAACTGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(104-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A1KS89

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Neisseria meningitidis strain C311

99.497

100

0.995