Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   JR883_RS20090 Genome accession   NZ_CP070930
Coordinates   4188252..4188728 (+) Length   158 a.a.
NCBI ID   WP_001186747.1    Uniprot ID   -
Organism   Escherichia coli strain 30COLEC     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4183252..4193728
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JR883_RS20070 (JR883_20070) - 4184125..4185144 (+) 1020 WP_071702264.1 transcriptional regulator -
  JR883_RS20075 (JR883_20075) - 4185254..4186126 (+) 873 WP_063122478.1 GTPase family protein -
  JR883_RS20080 (JR883_20080) - 4186843..4187661 (+) 819 WP_001234702.1 DUF932 domain-containing protein -
  JR883_RS20085 (JR883_20085) - 4187752..4188237 (+) 486 WP_000214317.1 antirestriction protein -
  JR883_RS20090 (JR883_20090) radC 4188252..4188728 (+) 477 WP_001186747.1 RadC family protein Machinery gene
  JR883_RS20095 (JR883_20095) - 4188797..4189018 (+) 222 WP_000692312.1 DUF987 domain-containing protein -
  JR883_RS20100 (JR883_20100) - 4189098..4189466 (+) 369 WP_053287563.1 type IV toxin-antitoxin system YeeU family antitoxin -
  JR883_RS20105 (JR883_20105) cbtA 4189556..4189933 (+) 378 WP_000854821.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  JR883_RS20110 (JR883_20110) - 4189930..4190127 (+) 198 Protein_3988 DUF5983 family protein -
  JR883_RS20115 (JR883_20115) - 4190155..4190352 (+) 198 WP_023563519.1 DUF957 domain-containing protein -
  JR883_RS20120 (JR883_20120) - 4190437..4191279 (+) 843 WP_071701699.1 DUF4942 domain-containing protein -
  JR883_RS20125 (JR883_20125) cadC 4192028..4193566 (+) 1539 WP_074477856.1 lysine decarboxylation/transport transcriptional activator CadC -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17642.22 Da        Isoelectric Point: 6.9859

>NTDB_id=475151 JR883_RS20090 WP_001186747.1 4188252..4188728(+) (radC) [Escherichia coli strain 30COLEC]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=475151 JR883_RS20090 WP_001186747.1 4188252..4188728(+) (radC) [Escherichia coli strain 30COLEC]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAGCGGGCCTTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGGGAGTGGCTGATTCTGAACATGGCGGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGTGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTACCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

59.615

65.823

0.392