Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   JR883_RS08470 Genome accession   NZ_CP070930
Coordinates   1799498..1800925 (-) Length   475 a.a.
NCBI ID   WP_000980589.1    Uniprot ID   P04995
Organism   Escherichia coli strain 30COLEC     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1794498..1805925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JR883_RS08440 (JR883_08440) yeeZ 1794554..1795378 (+) 825 WP_000754752.1 SDR family oxidoreductase -
  JR883_RS08445 (JR883_08445) yeeY 1795424..1796353 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  JR883_RS08450 (JR883_08450) yoeI 1796568..1796630 (+) 63 WP_010723108.1 membrane protein YoeI -
  JR883_RS08455 (JR883_08455) plaP 1796620..1797978 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  JR883_RS08460 (JR883_08460) tsuA 1798156..1799214 (+) 1059 WP_000492309.1 thiosulfate utilization transporter TsuA/YeeE -
  JR883_RS08465 (JR883_08465) tsuB 1799228..1799455 (+) 228 WP_000234896.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  JR883_RS08470 (JR883_08470) sbcB 1799498..1800925 (-) 1428 WP_000980589.1 exodeoxyribonuclease I Machinery gene
  JR883_RS08475 (JR883_08475) dacD 1801134..1802300 (+) 1167 WP_097734629.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  JR883_RS08480 (JR883_08480) sbmC 1802419..1802892 (+) 474 WP_001105389.1 DNA gyrase inhibitor SbmC -
  JR883_RS08485 (JR883_08485) yeeA 1803090..1804148 (+) 1059 WP_001200891.1 FUSC family protein -
  JR883_RS08490 (JR883_08490) tmaR 1804320..1804649 (+) 330 WP_000450409.1 DUF496 family protein -
  JR883_RS08495 (JR883_08495) - 1804750..1804935 (-) 186 Protein_1683 EutP/PduV family microcompartment system protein -
  JR883_RS08500 (JR883_08500) - 1804986..1805132 (+) 147 Protein_1684 transposase domain-containing protein -
  JR883_RS08505 (JR883_08505) - 1805421..1805501 (-) 81 Protein_1685 hypothetical protein -
  JR883_RS08510 (JR883_08510) yeeW 1805547..1805741 (-) 195 WP_123055320.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54500.81 Da        Isoelectric Point: 5.4700

>NTDB_id=475121 JR883_RS08470 WP_000980589.1 1799498..1800925(-) (sbcB) [Escherichia coli strain 30COLEC]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=475121 JR883_RS08470 WP_000980589.1 1799498..1800925(-) (sbcB) [Escherichia coli strain 30COLEC]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGAGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAACGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCAGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGTCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGTTATGCTGATGAATTGCAGATGCTGGTACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCACTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 1FXX
  PDB 2QXF
  PDB 3C94
  PDB 3C95
  PDB 3HL8
  PDB 3HP9
  PDB 4HCB
  PDB 4HCC
  PDB 4JRP
  PDB 4JRQ
  PDB 4JS4
  PDB 4JS5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

59.149

98.947

0.585