Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DMSX03_RS11775 Genome accession   NZ_CP060271
Coordinates   2467105..2468475 (-) Length   456 a.a.
NCBI ID   WP_029377941.1    Uniprot ID   -
Organism   Staphylococcus xylosus strain DMSX03     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2462105..2473475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DMSX03_RS11760 cysE 2463094..2463744 (-) 651 WP_037557109.1 serine O-acetyltransferase -
  DMSX03_RS11765 gltX 2464088..2465542 (-) 1455 WP_029377939.1 glutamate--tRNA ligase -
  DMSX03_RS11770 - 2465966..2467024 (-) 1059 WP_029377940.1 PIN/TRAM domain-containing protein -
  DMSX03_RS11775 radA 2467105..2468475 (-) 1371 WP_029377941.1 DNA repair protein RadA Machinery gene
  DMSX03_RS11780 - 2468818..2471280 (-) 2463 WP_029377942.1 ATP-dependent Clp protease ATP-binding subunit -
  DMSX03_RS11785 - 2471294..2472304 (-) 1011 WP_029377943.1 protein arginine kinase -
  DMSX03_RS11790 - 2472297..2472848 (-) 552 WP_029377944.1 UvrB/UvrC motif-containing protein -
  DMSX03_RS11795 - 2472865..2473326 (-) 462 WP_029377945.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50420.97 Da        Isoelectric Point: 7.4599

>NTDB_id=475115 DMSX03_RS11775 WP_029377941.1 2467105..2468475(-) (radA) [Staphylococcus xylosus strain DMSX03]
MAKKKVIFECMACGYQSPKWMGKCPNCGGWNQMEEIVEQKAASPKHGVRSRDNISKVQKLNDIKHETTPRVKTNSEEFNR
VLGGGIVNGSLVLIGGDPGIGKSTLLLQICAALSQSKNVLYITGEESLNQTKLRAERLDEDSSQLNVFAETDLEVIHETV
KQLKPDLLVVDSIQTIFHPEISSAPGSVSQVRESTQSLMNIAKQLNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGD
EHHAYRILRAVKNRFGSTNEMGIFEMQQTGLKGVKNPSEMFLEERSTNVPGSTIVSTMEGTRPLLIEVQALVTPTTFNNP
RRMATGIDHNRLSLLMAVLEKKENYLLQQQDAYIKVAGGVRLTEPAVDLGIVVATASSFKDLTVDGLDCFIGEVGLTGEV
RRVSRIEQRVQEAEKLGFKRVIIPESNIGGWQFPKDIKVIGVKNVHEALKYALTKQ

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=475115 DMSX03_RS11775 WP_029377941.1 2467105..2468475(-) (radA) [Staphylococcus xylosus strain DMSX03]
TTGGCTAAAAAGAAAGTAATTTTTGAATGTATGGCCTGTGGCTACCAGTCTCCAAAGTGGATGGGGAAATGCCCAAATTG
TGGTGGCTGGAATCAAATGGAAGAAATAGTCGAACAAAAGGCCGCGAGTCCAAAACATGGCGTACGCAGTCGAGACAATA
TTTCTAAAGTGCAAAAATTAAATGACATAAAACATGAAACGACGCCACGAGTAAAAACAAACTCTGAAGAATTTAATAGA
GTGCTTGGCGGCGGTATAGTAAATGGTTCGCTTGTATTGATAGGTGGCGATCCAGGTATTGGTAAATCTACATTACTCTT
ACAAATTTGTGCAGCATTATCACAATCTAAAAATGTGCTGTATATTACAGGTGAGGAGTCGTTAAATCAAACGAAATTAA
GAGCAGAAAGGTTAGACGAGGACTCAAGTCAATTAAATGTGTTTGCTGAAACAGATTTAGAAGTTATACATGAAACAGTT
AAGCAACTCAAACCAGATTTACTTGTAGTAGACTCAATCCAAACTATTTTTCATCCGGAAATTAGTTCGGCACCAGGTTC
TGTGTCGCAAGTTAGAGAAAGTACGCAAAGTTTAATGAATATAGCTAAACAATTGAATATAGCTACATTTATAGTGGGAC
ATGTTACGAAAGAAGGACAAATAGCTGGCCCGCGTTTACTTGAACACATGGTGGATACAGTTCTATACTTTGAAGGCGAC
GAGCATCATGCGTATCGTATTTTAAGAGCAGTTAAAAACCGTTTTGGCTCTACGAATGAGATGGGTATCTTTGAAATGCA
ACAAACTGGATTAAAAGGAGTAAAAAACCCGTCGGAAATGTTCCTTGAAGAACGTTCGACTAATGTACCTGGGTCAACCA
TTGTTTCTACGATGGAAGGCACGAGACCATTACTTATAGAAGTACAAGCGTTAGTGACGCCAACTACATTTAATAATCCA
AGACGTATGGCGACAGGTATCGATCATAATCGATTGAGTTTGCTCATGGCAGTGCTAGAAAAGAAAGAGAATTATTTACT
ACAACAACAGGATGCTTATATTAAAGTAGCCGGTGGTGTACGTTTAACAGAACCTGCAGTAGATTTAGGTATTGTTGTTG
CGACGGCTTCAAGTTTTAAAGATTTAACAGTTGATGGTTTAGACTGCTTTATTGGAGAAGTAGGACTTACAGGGGAAGTT
AGGCGTGTTTCGCGTATAGAGCAACGTGTACAAGAAGCGGAAAAATTAGGGTTTAAGCGCGTAATTATTCCAGAATCAAA
TATTGGTGGATGGCAATTTCCAAAGGACATTAAGGTTATTGGTGTTAAGAATGTCCATGAAGCATTAAAATATGCACTAA
CAAAACAGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(67-219)

Subunit ChlI of Mg-chelatase (ChlI)

(356-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

65.57

100

0.656
  radA Streptococcus pneumoniae Rx1

60.222

98.684

0.594
  radA Streptococcus pneumoniae D39

60.222

98.684

0.594
  radA Streptococcus pneumoniae R6

60.222

98.684

0.594
  radA Streptococcus pneumoniae TIGR4

60.222

98.684

0.594
  radA Streptococcus mitis NCTC 12261

60.222

98.684

0.594
  radA Streptococcus mitis SK321

60

98.684

0.592