Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   DMSX03_RS09385 Genome accession   NZ_CP060271
Coordinates   1975015..1975578 (-) Length   187 a.a.
NCBI ID   WP_029379122.1    Uniprot ID   -
Organism   Staphylococcus xylosus strain DMSX03     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1970015..1980578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DMSX03_RS09355 - 1970698..1971636 (+) 939 WP_029379118.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  DMSX03_RS09360 - 1971710..1972279 (-) 570 WP_029379119.1 GNAT family N-acetyltransferase -
  DMSX03_RS09365 - 1972460..1972672 (+) 213 WP_029379120.1 TM2 domain-containing protein -
  DMSX03_RS09370 - 1973243..1973734 (-) 492 WP_058625864.1 hypothetical protein -
  DMSX03_RS09385 comK/comK1 1975015..1975578 (-) 564 WP_029379122.1 competence protein ComK Regulator
  DMSX03_RS09390 - 1975831..1976049 (+) 219 WP_029379123.1 IDEAL domain-containing protein -
  DMSX03_RS09395 - 1976149..1977135 (-) 987 WP_029379124.1 lipoate--protein ligase -
  DMSX03_RS09400 - 1977335..1977520 (+) 186 WP_002483735.1 DUF2187 family protein -
  DMSX03_RS09405 - 1977526..1978128 (+) 603 WP_029379125.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  DMSX03_RS09410 - 1978195..1979703 (-) 1509 WP_029379126.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 21888.24 Da        Isoelectric Point: 9.5362

>NTDB_id=475111 DMSX03_RS09385 WP_029379122.1 1975015..1975578(-) (comK/comK1) [Staphylococcus xylosus strain DMSX03]
MIQPYIIKKGDMVLQPCNLATGHYEGSYLLRYKADSQIIKERVSKIIDRSCRFYGSSYVFKKEDTMRITGISSKPPILFT
PLFPTYFFPTHSDRKADNTWINIHYVHNIRPLKEKKCKVTFVDNQSIVANISAHSMHHQYLNGIYYYYMMDRAARVATFD
PDSPIDYTKPQLNIYEALAKYSLFESK

Nucleotide


Download         Length: 564 bp        

>NTDB_id=475111 DMSX03_RS09385 WP_029379122.1 1975015..1975578(-) (comK/comK1) [Staphylococcus xylosus strain DMSX03]
ATGATTCAACCATATATTATTAAAAAAGGTGATATGGTTTTACAACCATGCAATTTAGCTACTGGACATTATGAAGGTAG
TTACTTGCTAAGGTATAAAGCCGACAGTCAAATTATTAAAGAACGAGTATCAAAAATAATCGACCGTTCATGTAGGTTTT
ATGGTAGCAGTTATGTATTTAAAAAAGAAGATACCATGCGTATTACAGGTATAAGCAGTAAGCCACCCATTCTATTCACT
CCATTATTTCCCACTTATTTCTTTCCCACACACTCTGATCGTAAAGCAGATAATACCTGGATTAATATCCATTATGTACA
TAATATTAGACCACTTAAAGAAAAGAAATGTAAGGTTACTTTTGTAGATAATCAAAGTATTGTAGCTAACATTTCTGCTC
ATAGCATGCATCATCAATATTTAAATGGTATATATTATTATTACATGATGGATAGGGCAGCAAGAGTCGCTACATTTGAT
CCTGATTCGCCAATTGATTATACTAAACCACAATTAAATATATATGAAGCGTTGGCTAAATATTCGTTGTTTGAATCGAA
ATAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

55.191

97.861

0.54
  comK/comK1 Staphylococcus aureus N315

55.191

97.861

0.54