Detailed information NTG0475108

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: JR883_RS04950
• Genome accession: NZ_CP070930
• Coordinates: 1041268..1042260 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 30COLEC
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1036268..1047260

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JR883_RS04920 (JR883_04920)	ispD	1036329..1037039 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
JR883_RS04925 (JR883_04925)	ispF	1037039..1037518 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
JR883_RS04930 (JR883_04930)	truD	1037515..1038564 (+)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
JR883_RS04935 (JR883_04935)	surE	1038545..1039306 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
JR883_RS04940 (JR883_04940)	pcm	1039300..1039926 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
JR883_RS04945 (JR883_04945)	nlpD	1040111..1041205 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
JR883_RS04950 (JR883_04950)	rpoS	1041268..1042260 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
JR883_RS04955 (JR883_04955)	ygbN	1042354..1043718 (-)	1365	WP_000104459.1	GntP family transporter	-
JR883_RS04960 (JR883_04960)	ygbM	1043807..1044583 (-)	777	WP_001136925.1	HPr family phosphocarrier protein	-
JR883_RS04965 (JR883_04965)	ygbL	1044588..1045226 (-)	639	WP_001278994.1	aldolase	-
JR883_RS04970 (JR883_04970)	otnK	1045223..1046485 (-)	1263	WP_126738306.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=475108 JR883_RS04950 WP_000081550.1 1041268..1042260(+) (rpoS) [Escherichia coli strain 30COLEC]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=475108 JR883_RS04950 WP_000081550.1 1041268..1042260(+) (rpoS) [Escherichia coli strain 30COLEC]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715