Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   JR909_RS08720 Genome accession   NZ_CP070920
Coordinates   1822457..1823884 (-) Length   475 a.a.
NCBI ID   WP_001542951.1    Uniprot ID   -
Organism   Escherichia coli strain 40EC     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1817457..1828884
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JR909_RS08690 (JR909_08690) yeeZ 1817512..1818336 (+) 825 WP_205899268.1 SDR family oxidoreductase -
  JR909_RS08695 (JR909_08695) yeeY 1818382..1819311 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  JR909_RS08700 (JR909_08700) yoeI 1819526..1819588 (+) 63 WP_010723108.1 membrane protein YoeI -
  JR909_RS08705 (JR909_08705) plaP 1819578..1820936 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  JR909_RS08710 (JR909_08710) tsuA 1821115..1822173 (+) 1059 WP_000492344.1 thiosulfate utilization transporter TsuA/YeeE -
  JR909_RS08715 (JR909_08715) tsuB 1822187..1822414 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  JR909_RS08720 (JR909_08720) sbcB 1822457..1823884 (-) 1428 WP_001542951.1 exodeoxyribonuclease I Machinery gene
  JR909_RS08725 (JR909_08725) dacD 1824093..1825259 (+) 1167 WP_001296209.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  JR909_RS08730 (JR909_08730) sbmC 1825378..1825851 (+) 474 WP_001105415.1 DNA gyrase inhibitor SbmC -
  JR909_RS08735 (JR909_08735) yeeA 1826049..1827107 (+) 1059 WP_001200891.1 FUSC family protein -
  JR909_RS08740 (JR909_08740) tmaR 1827279..1827608 (+) 330 WP_000450409.1 DUF496 family protein -
  JR909_RS08745 (JR909_08745) - 1827709..1828152 (-) 444 WP_001542950.1 EutP/PduV family microcompartment system protein -
  JR909_RS08750 (JR909_08750) pduU 1828157..1828507 (-) 351 WP_000211393.1 propanediol utilization microcompartment protein PduU -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54472.76 Da        Isoelectric Point: 5.4720

>NTDB_id=475043 JR909_RS08720 WP_001542951.1 1822457..1823884(-) (sbcB) [Escherichia coli strain 40EC]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFEYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=475043 JR909_RS08720 WP_001542951.1 1822457..1823884(-) (sbcB) [Escherichia coli strain 40EC]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCAGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGTTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGAATATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAGGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581