Detailed information NTG0475030

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: JR909_RS04980
• Genome accession: NZ_CP070920
• Coordinates: 1036649..1037641 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 40EC
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1031649..1042641

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JR909_RS04950 (JR909_04950)	ispD	1031710..1032420 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
JR909_RS04955 (JR909_04955)	ispF	1032420..1032899 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
JR909_RS04960 (JR909_04960)	truD	1032896..1033945 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
JR909_RS04965 (JR909_04965)	surE	1033926..1034687 (+)	762	WP_001349984.1	5'/3'-nucleotidase SurE	-
JR909_RS04970 (JR909_04970)	pcm	1034681..1035307 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
JR909_RS04975 (JR909_04975)	nlpD	1035492..1036586 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
JR909_RS04980 (JR909_04980)	rpoS	1036649..1037641 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
JR909_RS04985 (JR909_04985)	-	1037762..1038169 (-)	408	WP_001208070.1	MarR family transcriptional regulator	-
JR909_RS04990 (JR909_04990)	-	1038316..1038909 (+)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
JR909_RS04995 (JR909_04995)	-	1038909..1040336 (+)	1428	WP_000863235.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
JR909_RS05000 (JR909_05000)	-	1040347..1040583 (+)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
JR909_RS05005 (JR909_05005)	ygbN	1040622..1041986 (-)	1365	WP_000104439.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=475030 JR909_RS04980 WP_000081550.1 1036649..1037641(+) (rpoS) [Escherichia coli strain 40EC]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=475030 JR909_RS04980 WP_000081550.1 1036649..1037641(+) (rpoS) [Escherichia coli strain 40EC]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715