Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   JR909_RS01925 Genome accession   NZ_CP070920
Coordinates   421261..421728 (-) Length   155 a.a.
NCBI ID   WP_000340167.1    Uniprot ID   A7ZSL1
Organism   Escherichia coli strain 40EC     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 416261..426728
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JR909_RS01900 (JR909_01900) rpsG 416402..416872 (+) 471 WP_001138043.1 30S ribosomal protein S7 -
  JR909_RS01905 (JR909_01905) fusA 416969..419083 (+) 2115 WP_000124700.1 elongation factor G -
  JR909_RS01910 (JR909_01910) tuf 419154..420338 (+) 1185 WP_000031783.1 elongation factor Tu -
  JR909_RS01915 (JR909_01915) bfd 420521..420715 (+) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  JR909_RS01920 (JR909_01920) bfr 420788..421264 (+) 477 WP_000675515.1 bacterioferritin -
  JR909_RS01925 (JR909_01925) pilD 421261..421728 (-) 468 WP_000340167.1 A24 family peptidase Machinery gene
  JR909_RS01930 (JR909_01930) rpsJ 422107..422418 (+) 312 WP_001181004.1 30S ribosomal protein S10 -
  JR909_RS01935 (JR909_01935) rplC 422451..423080 (+) 630 WP_000579833.1 50S ribosomal protein L3 -
  JR909_RS01940 (JR909_01940) rplD 423091..423696 (+) 606 WP_000424395.1 50S ribosomal protein L4 -
  JR909_RS01945 (JR909_01945) rplW 423693..423995 (+) 303 WP_000617544.1 50S ribosomal protein L23 -
  JR909_RS01950 (JR909_01950) rplB 424013..424834 (+) 822 WP_000301864.1 50S ribosomal protein L2 -
  JR909_RS01955 (JR909_01955) rpsS 424851..425129 (+) 279 WP_001138117.1 30S ribosomal protein S19 -
  JR909_RS01960 (JR909_01960) rplV 425144..425476 (+) 333 WP_000447529.1 50S ribosomal protein L22 -
  JR909_RS01965 (JR909_01965) rpsC 425494..426195 (+) 702 WP_000529945.1 30S ribosomal protein S3 -
  JR909_RS01970 (JR909_01970) rplP 426208..426618 (+) 411 WP_000941212.1 50S ribosomal protein L16 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16984.17 Da        Isoelectric Point: 8.0293

>NTDB_id=475019 JR909_RS01925 WP_000340167.1 421261..421728(-) (pilD) [Escherichia coli strain 40EC]
MDATLPFLILYACLSVLLFLWDAKHGLLPDRFTCPLLWSGLLFSQVCNPDCLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVVGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=475019 JR909_RS01925 WP_000340167.1 421261..421728(-) (pilD) [Escherichia coli strain 40EC]
ATGGACGCTACCCTTCCCTTTCTGATTTTGTACGCTTGTTTATCTGTCCTACTTTTTTTATGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTCTCAGGTTTGTAATCCTGACTGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACCTGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTGTTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGTTGGGATAGTTTGCTGGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7ZSL1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.8

80.645

0.361