Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   JR892_RS01970 Genome accession   NZ_CP070914
Coordinates   433287..433964 (-) Length   225 a.a.
NCBI ID   WP_000178161.1    Uniprot ID   -
Organism   Escherichia coli strain 65COLEC     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 428287..438964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JR892_RS01955 (JR892_01955) chiA 429654..432347 (+) 2694 WP_001402584.1 bifunctional chitinase/lysozyme -
  JR892_RS01960 (JR892_01960) bfd 432516..432710 (+) 195 WP_000289085.1 bacterioferritin-associated ferredoxin -
  JR892_RS01965 (JR892_01965) bfr 432782..433258 (+) 477 WP_000675504.1 bacterioferritin -
  JR892_RS01970 (JR892_01970) pilD 433287..433964 (-) 678 WP_000178161.1 prepilin peptidase GspO Machinery gene
  JR892_RS01975 (JR892_01975) gspM 433964..434425 (-) 462 WP_001295161.1 type II secretion system protein GspM -
  JR892_RS01980 (JR892_01980) gspL 434422..435585 (-) 1164 WP_001115228.1 type II secretion system protein GspL -
  JR892_RS01985 (JR892_01985) gspK 435600..436583 (-) 984 WP_001058522.1 type II secretion system minor pseudopilin GspK -
  JR892_RS01990 (JR892_01990) gspJ 436576..437163 (-) 588 WP_000610634.1 type II secretion system minor pseudopilin GspJ -
  JR892_RS01995 (JR892_01995) gspI 437156..437533 (-) 378 WP_001041743.1 type II secretion system minor pseudopilin GspI -
  JR892_RS02000 (JR892_02000) gspH 437530..438039 (-) 510 WP_001076044.1 type II secretion system minor pseudopilin GspH -
  JR892_RS02005 (JR892_02005) gspG 438047..438484 (-) 438 WP_001202874.1 type II secretion system major pseudopilin GspG -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24898.78 Da        Isoelectric Point: 7.9563

>NTDB_id=474940 JR892_RS01970 WP_000178161.1 433287..433964(-) (pilD) [Escherichia coli strain 65COLEC]
MTMLLPLFILVGFIAGYFVNAIAYHLSPLEDKTALTFRQVLVHFRQKKYAWHDTVPLILCVAAAIACALAPFTPIVTGAL
FLYFCFVLTLSVIDFRTQLLPDKLTLPLLWLGLVFNAQYGLIDLHDAVYGAVAGYGVLWCVYWGVWLVCHKEGLGYGDFK
LLAAAGAWCGWQTLPMILLIASLGGIGYAIVSQLLQRRTITTIAFGPWLALGSMINLGYLAWISY

Nucleotide


Download         Length: 678 bp        

>NTDB_id=474940 JR892_RS01970 WP_000178161.1 433287..433964(-) (pilD) [Escherichia coli strain 65COLEC]
ATGACAATGCTACTGCCGCTCTTCATTCTGGTTGGTTTTATTGCAGGTTATTTTGTTAATGCCATCGCCTATCACCTCTC
GCCGTTGGAGGATAAAACGGCGTTAACGTTTCGCCAGGTATTGGTTCATTTCAGGCAAAAAAAATATGCCTGGCATGATA
CAGTGCCCCTGATACTTTGTGTTGCTGCTGCTATCGCCTGCGCCCTGGCACCTTTCACGCCCATCGTGACTGGCGCACTC
TTTCTCTATTTCTGTTTCGTACTCACGCTCAGTGTTATTGATTTTCGCACTCAGCTCCTGCCCGACAAACTCACCTTACC
GCTGCTCTGGCTTGGCTTGGTATTTAATGCGCAGTATGGATTAATTGATTTACATGATGCGGTTTACGGCGCGGTAGCGG
GCTATGGGGTGCTGTGGTGTGTTTACTGGGGCGTCTGGTTAGTTTGTCACAAAGAGGGATTGGGCTACGGTGATTTCAAG
CTACTGGCCGCTGCAGGCGCATGGTGTGGCTGGCAAACGTTGCCAATGATACTGCTGATTGCCTCGCTGGGTGGCATTGG
TTACGCCATCGTTTCACAACTTCTGCAACGCCGGACTATAACCACTATCGCATTCGGCCCGTGGCTTGCGCTCGGCAGCA
TGATAAACCTGGGGTATCTGGCCTGGATCTCTTATTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(82-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Neisseria gonorrhoeae MS11

32.946

100

0.378